View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8261_low_10 (Length: 531)
Name: NF8261_low_10
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8261_low_10 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 478; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 478; E-Value: 0
Query Start/End: Original strand, 19 - 516
Target Start/End: Complemental strand, 29137492 - 29136995
Alignment:
| Q |
19 |
tcaggtgttgctccggctgctcgaacagttgcaacagctacggatatttcagcagcagaaagtggatccaaaggatggcaagtttgtgctttcgccatta |
118 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29137492 |
tcaggtgttgctccagctgctcgaacagttgcaacagctacggatatttcagcagcagaaagtggatccaaaggatggcaagtttgtgctttcgccatta |
29137393 |
T |
|
| Q |
119 |
ctgtaatacctatgtcaaaggaaatggtttcttttctatcttttaattctgatagaagaaaaaatttcattgaagagaaatagaagttaaactatgcagc |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29137392 |
ctgtaatacctatgtcaaaggaaatggtttcttttctatcttttaattctgatagaagaaaaaatttcattgaagagaaatagaagttaaactatgcagc |
29137293 |
T |
|
| Q |
219 |
aaagatcaagatcaacaacaaataggaaatcaaaaaagcaggcatgaaacttagtacacaacaaggcttcctaatccaccaccaaacaaaacatagcatc |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29137292 |
aaagatcaagatcaacaacaaataggaaatcaaaaaagcaggcatgaaacttagtacacaacaaggcttcctaatccaccaccaaacaaaacatagcatc |
29137193 |
T |
|
| Q |
319 |
aaaattgaagcatccataagcagaacaccacagagaagctaaatcctataatcctaattctgtcccaatcgaaaacgggggtaaaatataaaagagtagt |
418 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||| |
|
|
| T |
29137192 |
aaaattgaagcatccataagcagaacaccacagagaagctaaatcctataatcctaattctgtcccaatcgaaaacgggggtaaaatataaaacagcagt |
29137093 |
T |
|
| Q |
419 |
gttatttaacaactaaaatttgactacttcggttacaactttttaagtggttaacacagttcaaatatattattaattatgttctgtatatggtaaat |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
29137092 |
gttatttaacaactaaaatttgactacttcggttacaactttttaagtggttaacgcagttcaaatatattattgattatgttctgtatatggtaaat |
29136995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 31 - 104
Target Start/End: Complemental strand, 14295338 - 14295265
Alignment:
| Q |
31 |
ccggctgctcgaacagttgcaacagctacggatatttcagcagcagaaagtggatccaaaggatggcaagtttg |
104 |
Q |
| |
|
|||||||| ||||||||||| |||||||| ||||||||||||||||| |||||||| ||||||||||| ||||| |
|
|
| T |
14295338 |
ccggctgcccgaacagttgctacagctaccgatatttcagcagcagatagtggatctaaaggatggcaggtttg |
14295265 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 485
Target Start/End: Complemental strand, 30526229 - 30526197
Alignment:
| Q |
453 |
acaactttttaagtggttaacacagttcaaata |
485 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
30526229 |
acaactttttaagtggttaacacacttcaaata |
30526197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 485
Target Start/End: Complemental strand, 30566569 - 30566537
Alignment:
| Q |
453 |
acaactttttaagtggttaacacagttcaaata |
485 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
30566569 |
acaactttttaagtggttaacacacttcaaata |
30566537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 518
Target Start/End: Original strand, 3970760 - 3970811
Alignment:
| Q |
467 |
ggttaacacagttcaaatatattattaattatgttctgtatatggtaaatga |
518 |
Q |
| |
|
|||||||||||||||||||| | |||||||||||| ||||||||| ||||| |
|
|
| T |
3970760 |
ggttaacacagttcaaatatgtagttaattatgttcagtatatggttaatga |
3970811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 485
Target Start/End: Complemental strand, 5008749 - 5008717
Alignment:
| Q |
453 |
acaactttttaagtggttaacacagttcaaata |
485 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| |
|
|
| T |
5008749 |
acaactttttaagtggttaacacaattcaaata |
5008717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 453 - 485
Target Start/End: Complemental strand, 33412426 - 33412394
Alignment:
| Q |
453 |
acaactttttaagtggttaacacagttcaaata |
485 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |
|
|
| T |
33412426 |
acaactttttaaggggttaacacagttcaaata |
33412394 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University