View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8261_low_11 (Length: 486)
Name: NF8261_low_11
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8261_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 385; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 64 - 468
Target Start/End: Complemental strand, 52578490 - 52578087
Alignment:
| Q |
64 |
aatactacgcgagacagactgaaactagtaaactttttagtttaagaggcttagtcaatatttgtgaaataaatcatgccacataaattcaaaggttggc |
163 |
Q |
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| T |
52578490 |
aatactgcgcgagacagactgaaactagtaaactttttagtttaagaggcttagtcaatatt-gtgaaataaatcatgccacataaattcaaaggttggc |
52578392 |
T |
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| Q |
164 |
tatctcttcaaaaatttgttaaaagtattgttaaaaattacagctcatttaattgctatgtgcttctaaagaatcaagagttaatataatatggatagca |
263 |
Q |
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| T |
52578391 |
tatctcttcaaaaatttgttaaaagtattgttaaaaattacagctcatttaattgctatgtgcttctaaagaatcaagagttaatataatatggatagca |
52578292 |
T |
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| Q |
264 |
ttctggctttcttcgtgtatttcaggatagttgaattcccgtttgtgtttgtgcttgtcattcaaaaaacccttatatcatatagctgttcatatatttt |
363 |
Q |
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| T |
52578291 |
ttctggctttcttcgtgtatatcaggatagttgaattcccgtttgtgtttgtgcttgtcattcaaaaaacccttatatcatatagctgttcatatatttt |
52578192 |
T |
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| Q |
364 |
actattttattctctgatctattgattggtttttcggtagagtcaattgatgttgtttgatctatatgtctgaccctatcttgtgggacaaagacttcct |
463 |
Q |
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| T |
52578191 |
actattttattctctgatctattgattggtttttcggtagagtcaattgatgttgtttgatctatatgtccgaccctatcttgtgggacaaagacttcct |
52578092 |
T |
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| Q |
464 |
tgatg |
468 |
Q |
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| T |
52578091 |
tgatg |
52578087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 19 - 53
Target Start/End: Complemental strand, 52578539 - 52578505
Alignment:
| Q |
19 |
atttaatacacacttctgtgttaaattccacttca |
53 |
Q |
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| T |
52578539 |
atttaatacacacttctgtgttaaattctacttca |
52578505 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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