View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8261_low_12 (Length: 476)
Name: NF8261_low_12
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8261_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 259 - 461
Target Start/End: Complemental strand, 33628614 - 33628412
Alignment:
| Q |
259 |
tgaatgatagattttatcaaatctaaacaaaactgaattttaaaaaatctagtacaaatataagaaatagtacatataatgtttcaaaaaatacatcaat |
358 |
Q |
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| T |
33628614 |
tgaattatagattttatcaaatctaaacaaaactgaattttaaaaaatctagtacaaatataagaaatagtacatataatgtttcaaaaaatacatcaac |
33628515 |
T |
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| Q |
359 |
aatttttctttcaattttgcatgcaaacttcatggatgatttccttctccgtcttctcctttaacaaaccgataccaaaaccaatgtttaccccatatga |
458 |
Q |
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| T |
33628514 |
aatttttctttcaattttgcatgcaaacttcatggatgatttccttctccgtcttctcctttaacaaaccgataccaaaaccaatgtttaccccatatga |
33628415 |
T |
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| Q |
459 |
tgt |
461 |
Q |
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||| |
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| T |
33628414 |
tgt |
33628412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 139; E-Value: 2e-72
Query Start/End: Original strand, 125 - 409
Target Start/End: Complemental strand, 33624844 - 33624556
Alignment:
| Q |
125 |
atcatgaagattacattcttattgcattgtggtgttaa----atatacactcacacatgctaattaacttgctaaaaactctcaattattaacaaacttc |
220 |
Q |
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| T |
33624844 |
atcatgaaaatttcattctaattgcattgtggtgttaagcttatatacactcacacattctaattaacttgctaaaaactctcaattattaacacacttc |
33624745 |
T |
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| Q |
221 |
ttaactaacttttaacacaagtgaactcctaacaactatgaatgatagattttatcaaatctaaacaaaactgaatt-ttaaaaaatctagtacaaatat |
319 |
Q |
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| T |
33624744 |
ttaactaacctttaacacaagtgaactcctaacaactatgaattatagatttcatcaaatctaagcaacattgacttctgaaaaaatatagcactaatat |
33624645 |
T |
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| Q |
320 |
aagaaatagtacatataatgtttcaaaaaatacatcaata-atttttctttcaattttgcatgcaaacttcatggatgatttccttctccg |
409 |
Q |
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| T |
33624644 |
aagaaatagt--atatattttttcaaagaatatatcaacatttttttctttcatgtttgtatacaaacttcatggacgatttccttctccg |
33624556 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 382 - 457
Target Start/End: Complemental strand, 33610006 - 33609931
Alignment:
| Q |
382 |
caaacttcatggatgatttccttctccgtcttctcctttaacaaaccgataccaaaaccaatgtttaccccatatg |
457 |
Q |
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||||||||||||||||||| ||| | ||||||||||||||||| ||| |||||||||||||||| |||||||| |
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| T |
33610006 |
caaacttcatggatgattttcttgacgatcttctcctttaacaaatcgacaccaaaaccaatgtttttcccatatg |
33609931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 8e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 192 - 288
Target Start/End: Original strand, 12059786 - 12059882
Alignment:
| Q |
192 |
ctaaaaactctcaattattaacaaacttcttaactaacttttaacacaagtgaactcctaacaactatgaatgatagattttatcaaatctaaacaa |
288 |
Q |
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|||||| |||||| || |||||||||||||||||||| | |||||||||| ||||| |||||||||||||| || ||||| |||||||| |||||| |
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| T |
12059786 |
ctaaaatctctcatctaataacaaacttcttaactaacctgtaacacaagtaaactcgtaacaactatgaattatggatttgatcaaatccaaacaa |
12059882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 162 - 281
Target Start/End: Original strand, 12053055 - 12053171
Alignment:
| Q |
162 |
aatatacactcacacatgctaattaacttgctaaaaactctcaattattaacaaacttcttaactaacttttaacacaagtgaactcctaacaactatga |
261 |
Q |
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|||||||||||||| | |||| |||||||||||| |||||| || ||||| ||||||||||| | |||||||||| |||||||||||||||||| |
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| T |
12053055 |
aatatacactcacaattactaagaaacttgctaaaatttctcaactactaacatacttcttaact----tgtaacacaagtaaactcctaacaactatga |
12053150 |
T |
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| Q |
262 |
atgataga-ttttatcaaatc |
281 |
Q |
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|| || || |||||||||||| |
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| T |
12053151 |
attatggatttttatcaaatc |
12053171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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