View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8261_low_13 (Length: 473)
Name: NF8261_low_13
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8261_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 335; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 14 - 469
Target Start/End: Complemental strand, 42576826 - 42576379
Alignment:
| Q |
14 |
tttcgtgttaaacaagnnnnnnngttctcaattcccggttgctttttctaaacccctactaaaacctcttctatcattttgtttagattttgactttttt |
113 |
Q |
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| T |
42576826 |
tttcgtgttaaacaagtttttttgttctcaattcccggttgctttttctaaacccctactaaaacatcttctatcattttgtttagattttgactttttt |
42576727 |
T |
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| Q |
114 |
gacatttgtattatcnnnnnnntaaattgacattttctagacacaaataattaagtaaacgaaaaacaaaatttattttatacatgacttaaccaaaccc |
213 |
Q |
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| T |
42576726 |
gacatttgtattatcaaaaaaataaattgacattttctagacacaaataattaagtaaacgaaaaacaaa-tttattttatacatgacttaaccaaaccc |
42576628 |
T |
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| Q |
214 |
agttttactccctaaatttatcatatgtact---ttttaggaaaccaccgtaattaagtaccaatacatattaattttgtttctttcaataaaaatacat |
310 |
Q |
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| T |
42576627 |
agttttactccctaaatttatcatatgtactattttttaggaaaccac-gtaattaagtaccaatacatattaactttgtttctttcaataaaaatacat |
42576529 |
T |
|
| Q |
311 |
attaatttggttgttaaggatttgaatgctacgttgtaagaacgtgagtttaactttcattgttaccgttaaaatcttgttggtagaccatatgtaagta |
410 |
Q |
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| T |
42576528 |
attaatttgattgttaaggatttgaatgctacgttgtaagaacgtgagtttaactttcattgttagcgttaaaatcttgttggtag---------aagta |
42576438 |
T |
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| Q |
411 |
cctctttgagccttatgcactgccataatcttggtgagcctctaaaataaatgataaat |
469 |
Q |
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| T |
42576437 |
cctctttgagccttatgcactgccataatcttggtgagcccctaaaataaatgataaat |
42576379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 37 - 89
Target Start/End: Complemental strand, 42569762 - 42569710
Alignment:
| Q |
37 |
gttctcaattcccggttgctttttctaaacccctactaaaacctcttctatca |
89 |
Q |
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| T |
42569762 |
gttctcaattctcggttgctttttctaaagccctgctaaaacctcttccatca |
42569710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 381 - 449
Target Start/End: Complemental strand, 42569408 - 42569341
Alignment:
| Q |
381 |
aaaatcttgttggtagaccatatgtaagtacctctttgagccttatgcactgccataatcttggtgagc |
449 |
Q |
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| T |
42569408 |
aaaatcttgttggtcaacaatttgtaagtacctctctgagccttatgca-tgccataatattagtgagc |
42569341 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 37 - 84
Target Start/End: Complemental strand, 42593708 - 42593660
Alignment:
| Q |
37 |
gttctcaattcccggttgctttttctaaac-ccctactaaaacctcttc |
84 |
Q |
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| T |
42593708 |
gttctcacttcccggttgcttttactaaacaccctactaaaacctcttc |
42593660 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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