View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8261_low_15 (Length: 452)
Name: NF8261_low_15
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8261_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 358; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 23 - 434
Target Start/End: Complemental strand, 17137535 - 17137127
Alignment:
| Q |
23 |
aattctataggaatggagtgctgcagaggagaaactcgtggcaggacggagtgtatggtacaaactgtccaatctctccaggacagaacttcacttatat |
122 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| ||||| || ||||||||||||||||| |||||||||||||||||| ||||| |||||||| |
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| T |
17137535 |
aattctataggaatggagtgctgcagaggagaaactcatggcaagatggagtgtatggtacaaattgtccaatctctccaggaaagaac---acttatat |
17137439 |
T |
|
| Q |
123 |
tcttcaagtaaaagatcagattggcagctatttctactttccttcccttgcatttcacaaggcagcaggtggttatggcggtttcacaatcgctactcgc |
222 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
17137438 |
tcttcaagtaaaagatcagattggcagctatttctactttccttcccttgcatttcacaaggcagcaggaggttatggcggtttcacaatcgctactcgc |
17137339 |
T |
|
| Q |
223 |
tccgtgattcctgtaccttttgatcctccatccggagatttcaccatacaggcaggagattggtacaaaagaaatcacagagttaagttttaactaagac |
322 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
17137338 |
tccgtgattcctgtaccttttgatcctccatccggagatttcaccatactggcaggagattggtacaaaagaaatcacacagttaagttttaactaagaa |
17137239 |
T |
|
| Q |
323 |
acagccttcactgtttaagaaatcttgaataaatcatgacttaatttgtgtttatttttgcaggatttgagggccattttagatagcagaaaaaatcttc |
422 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
17137238 |
acagccttcactgtttaagaaatcttgaataaatcatgacttaatttgtgtttatttttgcaggatttgagggccattttagatagcggaaaaaatcttc |
17137139 |
T |
|
| Q |
423 |
ctttccctgatg |
434 |
Q |
| |
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|||||||||||| |
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| T |
17137138 |
ctttccctgatg |
17137127 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 23 - 434
Target Start/End: Original strand, 17346256 - 17346666
Alignment:
| Q |
23 |
aattctataggaatggagtgctgcagaggagaaactcgtggcaggacggagtgtatggtacaaactgtccaatctctccaggacagaacttcacttatat |
122 |
Q |
| |
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|||| ||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
17346256 |
aattttataggaatggagtgctacagaggagaaactcatggcaggatggagtgtatggtacaaattgtccaatctctccaggacagaacttcacttatat |
17346355 |
T |
|
| Q |
123 |
tcttcaagtaaaagatcagattggcagctatttctactttccttcccttgcatttcacaaggcagcaggtggttatggcggtttcacaatcgctactcgc |
222 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
17346356 |
tcttcaagtaaaagatcagattggtagctatttctactttccttcccttgcatttcacaaggcagcaggtggttatggcggtttcacaatcgctagtcgc |
17346455 |
T |
|
| Q |
223 |
tccgtgattcctgtaccttttgatcctccatccggagatttcaccatacaggcaggagattggtacaaaagaaatcacagagttaagttttaactaagac |
322 |
Q |
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||||||||||| |||||||| ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
17346456 |
tccgtgattcccgtacctttcgatcctccatccggagattacaccatattggcaggagattggtacaaaagaaatcacacagttaagttttaactaagaa |
17346555 |
T |
|
| Q |
323 |
acagccttcactgtttaagaaatcttgaataaatcatgacttaatttgtgtttatttttgcaggatttgagggccattttagatagcagaaaaaatcttc |
422 |
Q |
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| ||||||||| ||||||||||||||||||| ||||||||| || ||||||| ||||||||||||||||| ||||||||||||||| ||| |||||| |
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| T |
17346556 |
atagccttcacggtttaagaaatcttgaataggtcatgacttcatctgtgttt-tttttgcaggatttgagagccattttagatagcggaagtgatcttc |
17346654 |
T |
|
| Q |
423 |
ctttccctgatg |
434 |
Q |
| |
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||||||| |||| |
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|
| T |
17346655 |
ctttcccggatg |
17346666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 70 - 196
Target Start/End: Complemental strand, 28940916 - 28940790
Alignment:
| Q |
70 |
ggagtgtatggtacaaactgtccaatctctccaggacagaacttcacttatattcttcaagtaaaagatcagattggcagctatttctactttccttccc |
169 |
Q |
| |
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||||| |||||||||| ||||| ||| |||| || |||||||||| || | |||||||| |||||||| ||||| |||| ||||| ||||| || | |
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| T |
28940916 |
ggagtttatggtacaacatgtcccatccctcctgggaagaacttcacatacacacttcaagtcaaagatcaaattggaagcttcttctattttccatctc |
28940817 |
T |
|
| Q |
170 |
ttgcatttcacaaggcagcaggtggtt |
196 |
Q |
| |
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|||| |||||||||||||| ||||||| |
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|
| T |
28940816 |
ttgcttttcacaaggcagctggtggtt |
28940790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 107 - 161
Target Start/End: Original strand, 55711324 - 55711378
Alignment:
| Q |
107 |
agaacttcacttatattcttcaagtaaaagatcagattggcagctatttctactt |
161 |
Q |
| |
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||||||||||||||| |||||| || |||||||||||||| |||||||||||||| |
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| T |
55711324 |
agaacttcacttatactcttcaggtgaaagatcagattggtagctatttctactt |
55711378 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 7e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 29 - 301
Target Start/End: Complemental strand, 37092134 - 37091862
Alignment:
| Q |
29 |
ataggaatggagtgctgcagaggagaaactcgtggcaggacggagtgtatggtacaaactgtccaatctctccaggacagaacttcacttatattcttca |
128 |
Q |
| |
|
||||||||||||||| ||||||||| || || ||||| || ||||| ||||| |||||||||||||| | ||||| |||||||| |||||| ||||||| |
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| T |
37092134 |
ataggaatggagtgcagcagaggaggaattcatggcaagatggagtatatggaacaaactgtccaattccaccagggcagaactttacttatgttcttca |
37092035 |
T |
|
| Q |
129 |
agtaaaagatcagattggcagctatttctactttccttcccttgcatttcacaaggcagcaggtggttatggcggtttcacaatcgctactcgctccgtg |
228 |
Q |
| |
|
|||||||||||||||||| ||||| || |||||||| ||||||||||| |||||||| |||||||||||||| || ||| ||| | ||| | || |
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| T |
37092034 |
agtaaaagatcagattggtagctacttttactttccctcccttgcattacacaaggccgcaggtggttatggtggcatcaaaattaacagccgccctatg |
37091935 |
T |
|
| Q |
229 |
attcctgtaccttttgatcctccatccggagatttcaccatacaggcaggagattggtacaaaagaaatcaca |
301 |
Q |
| |
|
||||||||||| ||| ||||||||| |||||||||||| |||||||||||||||||| |||||||||| |
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|
| T |
37091934 |
attcctgtaccgtttcctcctccatcgaatgatttcaccatattggcaggagattggtacaacagaaatcaca |
37091862 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 108 - 196
Target Start/End: Complemental strand, 53754506 - 53754418
Alignment:
| Q |
108 |
gaacttcacttatattcttcaagtaaaagatcagattggcagctatttctactttccttcccttgcatttcacaaggcagcaggtggtt |
196 |
Q |
| |
|
||||||||| |||||||||||||| || ||||| ||||| |||| || ||||||||| || || |||||||| || ||||| ||||||| |
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|
| T |
53754506 |
gaacttcacatatattcttcaagtgaaggatcaaattggaagcttttactactttccatctctagcatttcaaaaagcagctggtggtt |
53754418 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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