View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8261_low_16 (Length: 452)
Name: NF8261_low_16
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8261_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 242; Significance: 1e-134; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 10343924 - 10343552
Alignment:
| Q |
1 |
gggtatggtgctatcttctctttgatggtccgcagcccccaagcacaagactaacacttaggcgaagtgactgatcaatgtcttcctgtatatacatcga |
100 |
Q |
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| T |
10343924 |
gggtatggtgctatcttctctttgatggtccacagcccccaagcatgagactatcacttaggtgaagtgactgatcaatgtcttcctgtatatacatcga |
10343825 |
T |
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| Q |
101 |
gagta----tggagctatattt-agtccctatatatataattgtttcatgcacctgttgcaggacaaactgaggctggtgcataaaacaatagtaatgta |
195 |
Q |
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| T |
10343824 |
gagtacatatggagctatattttagtccatatatatataaatgtttcatgcacctgttgc-ggataaactgaagttggtgcatgaaacaatagtaatgta |
10343726 |
T |
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| Q |
196 |
attcagttttgtctttagatggtggaattaacaccaccactactactagtactagttgtaatatgaaggattatcattggcatgataatttatcaatcaa |
295 |
Q |
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| T |
10343725 |
attcagttttgtctttagatggtggaattaacaccaccactactactagtactagttgtactatgaaggattatcattggcatgataacttatcaatcaa |
10343626 |
T |
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| Q |
296 |
gagaaacagatcacctataggggatagttctagtcaaggttcacaaggtgatggaacctctagcagaagatgcat |
370 |
Q |
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| T |
10343625 |
gagatatatatcacctatatgagagagttctagtcaaggttcgcaaggcgacgg-acctctagcagaagacgcat |
10343552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 210 - 367
Target Start/End: Original strand, 10181092 - 10181249
Alignment:
| Q |
210 |
ttagatggtggaattaacaccaccactactactagtactagttgtaatatgaaggattatcattggcatgataatttatcaatcaagagaaacagatcac |
309 |
Q |
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| T |
10181092 |
ttagatagtgcaactaacaccaccactaataatactactagtagtactatgaatgatgatcagtggcctgataatttatcaatcaagagaagtagatcac |
10181191 |
T |
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| Q |
310 |
ctataggggatagttctagtcaaggttcacaaggtgatggaacctctagcagaagatg |
367 |
Q |
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| T |
10181192 |
ctaaaggagaaagttatagtcaagattcacaaactggtggaaccactagaagaagatg |
10181249 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 294 - 417
Target Start/End: Complemental strand, 10181758 - 10181632
Alignment:
| Q |
294 |
aagagaaacagatcacctataggggatagttctagtcaaggttcacaaggtgatggaacctctagcagaagatgcataat---tcctactcttcattctc |
390 |
Q |
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| T |
10181758 |
aagagaagtagatcaccaaaaggagaaagttctagtcaagattcacaagctgatggaacctctagcagaagacgcgtaattcctcctactctccatcctc |
10181659 |
T |
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| Q |
391 |
gtcaagaagatgtcaacaatgtcaaca |
417 |
Q |
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| T |
10181658 |
atcaagaagatatcaacaatgtcaaca |
10181632 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 180 - 287
Target Start/End: Complemental strand, 10182308 - 10182201
Alignment:
| Q |
180 |
aaacaatagtaatgtaattcagttttgtctttagatggtggaattaacaccaccactactactagtactagttgtaatatgaaggattatcattggcatg |
279 |
Q |
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||||||||||||||| |||| |||||| |||||||||| ||||||||||||||||||||| || || |||| | | ||||||||| ||| | |||||| |
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| T |
10182308 |
aaacaatagtaatgtcattccattttgtatttagatggtagaattaacaccaccactactaatactagtagtagcactatgaaggaatattagcggcatg |
10182209 |
T |
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| Q |
280 |
ataattta |
287 |
Q |
| |
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|||||||| |
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| T |
10182208 |
ataattta |
10182201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 227 - 409
Target Start/End: Original strand, 10343009 - 10343192
Alignment:
| Q |
227 |
caccaccactactactagtactagttgtaatatgaaggattatcattggcatgataatttatcaatcaagagaaacagatcacctataggggatagttct |
326 |
Q |
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| T |
10343009 |
caccactactactattagtagtagttgtactatgaattatgatcagtgacatgataatttattgattaagagaagtagatcacttagaggtgagagttat |
10343108 |
T |
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| Q |
327 |
agtcaaggttcacaaggtgatggaacctctagcagaagatgcataattcctac-tcttcattctcgtcaagaagatgtcaacaa |
409 |
Q |
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||| || ||||||||| | ||||| ||| ||||||||| || ||||||| | ||| ||| ||| |||||| ||||||||||| |
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| T |
10343109 |
agttaatgttcacaagctagtggaatctccagcagaagaagcgtaattcccccatctccatcctcatcaagacgatgtcaacaa |
10343192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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