View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8261_low_17 (Length: 448)
Name: NF8261_low_17
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8261_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 360; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 13 - 430
Target Start/End: Complemental strand, 29553431 - 29553015
Alignment:
| Q |
13 |
ggacatcacttggtctaaacaaaacaaagataacgcaaagagttatcatgaatgcataccaaaaagaattatcatgaatgcatcccaaaaagaaagccaa |
112 |
Q |
| |
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||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||| |
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| T |
29553431 |
ggacaccacttggtctacacaaaacaaagataacgcaaagaattatcatgaatgcataccaaaaa--attatcatgaatgcataccaaaaaaaaagccaa |
29553334 |
T |
|
| Q |
113 |
catatagattatacacagattgcacactacataaaagtttatatttgtta-tatcattatcaatgtctaaagtgaatctttacgacatacctttttattg |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29553333 |
catatagattatacacagattgcacactacataaaaatttatatctgttactatcattatcaatgtctaagttgaatctttacgacatacctttttattg |
29553234 |
T |
|
| Q |
212 |
ttttcaatgtaagatctaacaagataacgatcatacttctccttatcttcagcagatgctaaaagattaatcgtatcttgatcaacagcagcaccacaag |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
29553233 |
ttttcaatgtaagatctaacaagataacgatcatacttctccttatcttcagcagatgctaaaagattaattgtatcttgatcaacagcagcaccacaag |
29553134 |
T |
|
| Q |
312 |
cgggatcaggacatctcagcatcaagcatcccggaccatcgttgattgaggtgccaatatatcctctccagcatgaaaaacagtacggatgaccgcaaga |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29553133 |
cgggatcaggacatctcagcatcaagcatcccggaccatcgttgattgaggtgccaatatatcctctccagcatgaaaaacagtacggatgaccgcaaga |
29553034 |
T |
|
| Q |
412 |
agcagtgtgaatcttagaa |
430 |
Q |
| |
|
||||||||||||||||||| |
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|
| T |
29553033 |
agcagtgtgaatcttagaa |
29553015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 75 - 430
Target Start/End: Complemental strand, 29538252 - 29537894
Alignment:
| Q |
75 |
aaagaattatcatgaatgcatcccaaaaagaaagccaacatatagattatacacagattgcacactacataaaagtttatat--ttgttatatca-ttat |
171 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || | | ||| |||| |
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|
| T |
29538252 |
aaagaattatcatgaatgcataccaaaaagaaagccaacatatagattatacacagattgcacactacataaaagtatatataattagtttgtcaattat |
29538153 |
T |
|
| Q |
172 |
caatgtctaaagtgaatctttacgacatacctttttattgttttcaatgtaagatctaacaagataacgatcatacttctccttatcttcagcagatgct |
271 |
Q |
| |
|
||||||||| ||||||| || || |||||||||||||| ||||||||||||||||||||| ||||| |||||||||| ||||||||||||||||| |
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|
| T |
29538152 |
taatgtctaagttgaatctctaagatatacctttttattgacttcaatgtaagatctaacaaggtaacgttcatacttctttttatcttcagcagatgca |
29538053 |
T |
|
| Q |
272 |
aaaagattaatcgtatcttgatcaacagcagcaccacaagcgggatcaggacatctcagcatcaagcatcccggaccatcgttgattgaggtgccaatat |
371 |
Q |
| |
|
|| || |||| ||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| |
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|
| T |
29538052 |
aatgcatcaatcatatcttgatcaacggcagcagcacaggcgggatcaggacatctcagcatcaagcatcccagaccatcgttgattgaagtgccaatat |
29537953 |
T |
|
| Q |
372 |
atcctctccagcatgaaaaacagtacggatgaccgcaagaagcagtgtgaatcttagaa |
430 |
Q |
| |
|
|||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29537952 |
atcctccccagcatgaagaacagtacggatgaccacaagaagcagtgtgaatcttagaa |
29537894 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 45 - 80
Target Start/End: Complemental strand, 29538256 - 29538221
Alignment:
| Q |
45 |
acgcaaagagttatcatgaatgcataccaaaaagaa |
80 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||| |
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|
| T |
29538256 |
acgcaaagaattatcatgaatgcataccaaaaagaa |
29538221 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 75 - 376
Target Start/End: Complemental strand, 42189525 - 42189222
Alignment:
| Q |
75 |
aaagaattatcatgaatgcatcccaaaaagaaagccaacatatagattatacacagattgcacactacataaaagtttatatttgtta--tatcattatc |
172 |
Q |
| |
|
|||||||||| |||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||| || |||||||||| |
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|
| T |
42189525 |
aaagaattattatgaatgcatagcaaaaagaaagccaaagtatagattatacacagattgcacactacataaaagtatatattcatttactatcattatc |
42189426 |
T |
|
| Q |
173 |
aatgtctaaagtgaatctttacgacatacctttttattgttttcaatgtaagatctaacaagataacgatcatacttctccttatcttcagcagatgcta |
272 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||||| ||||||||||||||||| ||| ||||| |||||||||| ||||||||||||||||||| |
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|
| T |
42189425 |
aatgtctaagttgaatctctacgacatacctttttattgtcttcaatgtaagatctaataaggtaacggtcatacttctgtttatcttcagcagatgcta |
42189326 |
T |
|
| Q |
273 |
aaagattaatcgtatcttgatcaacagcagcaccacaagcgggatcaggacatctcagcatcaagcatcccggaccatcgttgattgaggtgccaatata |
372 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| ||||| ||||||||||| |
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|
| T |
42189325 |
aaagattaatcatatcttgatcaacagcagcaccacaagcaggatcaggacatctcagcatcaagcatccaggaccatcgttaattgaagtgccaatata |
42189226 |
T |
|
| Q |
373 |
tcct |
376 |
Q |
| |
|
|||| |
|
|
| T |
42189225 |
tcct |
42189222 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 374 - 430
Target Start/End: Complemental strand, 42189053 - 42188997
Alignment:
| Q |
374 |
cctctccagcatgaaaaacagtacggatgaccgcaagaagcagtgtgaatcttagaa |
430 |
Q |
| |
|
|||| |||||||||||||||||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
42189053 |
cctccccagcatgaaaaacagtacggatggccgcaagaagcattgtgaatcttagaa |
42188997 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 2e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 198 - 357
Target Start/End: Complemental strand, 25207633 - 25207474
Alignment:
| Q |
198 |
atacctttttattgttttcaatgtaagatctaacaagataacgatcatacttctccttatcttcagcagatgctaaaagattaatcgtatcttgatcaac |
297 |
Q |
| |
|
||||||||||||||| ||| || ||||||||| ||| ||||| ||||||| || ||||||||| | ||||||| | || |||| |||||||| ||| |
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|
| T |
25207633 |
atacctttttattgtcttcgatataagatctacgaaggtaacgggcatacttttctttatcttcattacatgctaataaatcaatcatatcttgaccaat |
25207534 |
T |
|
| Q |
298 |
agcagcaccacaagcgggatcaggacatctcagcatcaagcatcccggaccatcgttgat |
357 |
Q |
| |
|
|||||| ||||||| ||| ||||||||||||| |||||| ||||| |||||||||||||| |
|
|
| T |
25207533 |
agcagccccacaagtgggttcaggacatctcaacatcaaacatccaggaccatcgttgat |
25207474 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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