View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8261_low_20 (Length: 421)
Name: NF8261_low_20
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8261_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 273; Significance: 1e-152; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 16 - 402
Target Start/End: Original strand, 45808551 - 45808943
Alignment:
| Q |
16 |
aaagggttctcccttgaggagttgaaggtaaaatctgatttttgttttcgatgtagtctattgaaagtttacgcaaacttggttttgatgctatataatt |
115 |
Q |
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| T |
45808551 |
aaagggttctcccttgaggagttgaaggtaaaatctgatttttgttttcgatgtagtttattgaaagtttacgcaaacgtggttttgatgctatataatt |
45808650 |
T |
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| Q |
116 |
ctagatatttacttttgaagatttattaaagaaaatatatagatgctgttgtttttgtttacaagagaagctactcaaaacagcttcattttgattatta |
215 |
Q |
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| T |
45808651 |
ctagatatttacttttgaagatttattaaagaaaatatatagatgctgttgtttttgtttacaagagaagctactcaaaacagcttcactttgattatta |
45808750 |
T |
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| Q |
216 |
tcatgttttcattttttaagaatatgtaataaatggatgaaaactttggaaagtgaattttttacaaacaagctctatgtgaaattgtaggaactctacc |
315 |
Q |
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| T |
45808751 |
tgctgtt------------gtttatgtaataaatggatgaaaactttggaaagtgaattttttacaaacaagctctatgtgaaattgtaggaactctacc |
45808838 |
T |
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| Q |
316 |
tgatgatattattataatttaaaag------------------ggataaaacttgacgtgccctgtgtcctggcattgattattaatatcactatataaa |
397 |
Q |
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| T |
45808839 |
tgatgatattattataatttaaaagatataatctaatcttattggataaaacttgacgtgccctgtgtcctggcattgattattaatatcactatataga |
45808938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 203 - 340
Target Start/End: Complemental strand, 11045492 - 11045357
Alignment:
| Q |
203 |
attttgattattatcatgttttcattttttaagaatatgtaataaatggatgaaaactttggaaagtgaattttttacaaacaagctctatgtgaaattg |
302 |
Q |
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| T |
11045492 |
attttgattatgactatgttctcgttttttaagaatatgtaataaatggatgaaaacttttggaagtt--ttttttataaacaagctccatgtggaatta |
11045395 |
T |
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| Q |
303 |
taggaactctacctgatgatattattataatttaaaag |
340 |
Q |
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| T |
11045394 |
tatgatctctacctgatgatattattataattttaaag |
11045357 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 16 - 49
Target Start/End: Complemental strand, 11045752 - 11045719
Alignment:
| Q |
16 |
aaagggttctcccttgaggagttgaaggtaaaat |
49 |
Q |
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| T |
11045752 |
aaagggttctcccttgaggagttgaaggtaaaat |
11045719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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