View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8261_low_21 (Length: 418)
Name: NF8261_low_21
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8261_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 17 - 369
Target Start/End: Original strand, 48643573 - 48643925
Alignment:
| Q |
17 |
aattacaagacatgcatgttttgtgctggttgtcttgtctatatatactctataatgatcacttaaggaaaactctttgtatatattaatgtcttctttt |
116 |
Q |
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| T |
48643573 |
aattacaagacatgcatgttttgtgctggttgtcttgtctatatttactctataatgatcacttaaggaaaactctttgtatatattaatgtcttctttt |
48643672 |
T |
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| Q |
117 |
tcataccatatacaaggcattgctttgcttgcagatatatagattaagttcatttannnnnnnagatccattattcttttctccctcttgttagattcta |
216 |
Q |
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| T |
48643673 |
tcataccatatacaaggcattgctttgcttgcagatatatagattaagttcatttatttttttagatccattattcttttctccctcttgttagattcta |
48643772 |
T |
|
| Q |
217 |
tttgtagttggatttaataaactaatatgcttatgagctggttttgctaatgttattcataacacgagtaaattaaaaatgtctggtcaactttctttgc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48643773 |
tttgtagttggatttaataaactaatatgcttatgagctggttttgctaatgttattcataacacgagtaaattaaaaatgtctggtcaactttctttgc |
48643872 |
T |
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| Q |
317 |
aggttacgctttcttcatcaaatttgataattaagaagaaaaacaagaggaag |
369 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
48643873 |
aggttacgctttcttcatcaaatttgataattaagaagaaaaataagaggaag |
48643925 |
T |
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