View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8261_low_23 (Length: 399)
Name: NF8261_low_23
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8261_low_23 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 12 - 381
Target Start/End: Complemental strand, 48890434 - 48890065
Alignment:
| Q |
12 |
ttattctgaaattaaatcccaaacacgaacgcaactatcttctcccgaactgaccactctttctggctcaataaaagtcaagccatacactccacctaaa |
111 |
Q |
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| T |
48890434 |
ttattctgaaattaaatcccaaacacgaacgcaactatcttctcccgaactgaccactctttctggctcaataaaagtcaagccatacactccacctaaa |
48890335 |
T |
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| Q |
112 |
tgagccccttttatggttctgcggcttgatgctggctttccaatttcgtatacaataacacatgtatcaagtgaaccagtagctaccagtttgctattag |
211 |
Q |
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| T |
48890334 |
tgagccccttttatggttctgcggcttgatgctggctttccaatttcgtatacaataacacatgtatcaagtgaaccagtagctaccagtttgctattag |
48890235 |
T |
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| Q |
212 |
gtgaccaagcaagacagtttacacgtgcagtgtgaaacaacatgttattaagcaccacctgaaagagaaaggaagatttatttagcaacggcatttttca |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
48890234 |
gtgaccaagcaagacagtttacacgtgcagtgtgaaacaacatgttattaagcaccacctgaaagagaaaggaagatttatttagcaacgacatttttca |
48890135 |
T |
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| Q |
312 |
gtaagttatgacaaaaacaagtgtacatcatgataattgaagcaataatgttacaatcatgagagtataa |
381 |
Q |
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| T |
48890134 |
gtaagttatgacaaaaacaagtgtacatcatgataattgaagcaataatgttacaatcatgagagtataa |
48890065 |
T |
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