View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8261_low_24 (Length: 394)

Name: NF8261_low_24
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8261_low_24
NF8261_low_24
[»] chr1 (1 HSPs)
chr1 (18-394)||(12096886-12097262)
[»] chr4 (1 HSPs)
chr4 (18-394)||(36288312-36288688)


Alignment Details
Target: chr1 (Bit Score: 352; Significance: 0; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 18 - 394
Target Start/End: Complemental strand, 12097262 - 12096886
Alignment:
Q  18 acaacgttacttcagcgtatgtttgggttgcaaacagagaaaaaccaatcaaaaacagagaaggttctattacaatnnnnnnntgatggtaacttggtag 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  12097262 acaacgttacttcagcgtatgtttgggttgcaaacagagaaaaaccaatcaaaaacagagaaggttctattacaataaaaaaatgatggtaacttggtag 12097163  T
Q  118 ttcttgatggacaaaacaacgaggtttggcaagtaatatatcgaaaatttcgataaataattcacaagctgttcttcttaatgatgggaaccttattctt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12097162 ttcttgatggacaaaacaacgaggtttggcaagtaatatatcgaaaatttcgataaataattcacaagctgttcttcttaatgatgggaaccttattctt 12097063  T
Q  218 tctgatagagaaaataacaaagagatttggcaaagctttgaagatccaactgatacatatcttccaggtatggaagtttcggcgagtggtggaagtggaa 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  12097062 tctgatagagaaaataacaaagagatttggcaaagctttgaagatccaactgatacatatcttccaggtatgaaagtttcggcgagtggtggaagtggaa 12096963  T
Q  318 ttgggaaggatgctactttttgttcatggaaatcagaggaagatccttcatttggaaactatacaatgagtgttgat 394  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12096962 ttgggaaggatgctactttttgttcatggaaatcagaggaagatccttcatttggaaactatacaatgagtgttgat 12096886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 18 - 394
Target Start/End: Original strand, 36288312 - 36288688
Alignment:
Q  18 acaacgttacttcagcgtatgtttgggttgcaaacagagaaaaaccaatcaaaaacagagaaggttctattacaatnnnnnnntgatggtaacttggtag 117  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||| |||||       |||||||||||| || |    
T  36288312 acaacgttacttcagcgtatgtttgggttgcaaatagagaaaaaccaatcaaaaacagagaaggttttatcacaataaaaaa-tgatggtaacttagttg 36288410  T
Q  118 ttcttgatggacaaaacaacgaggtttgg-caagtaatatatcgaaaatttcgataaataattcacaagctgttcttcttaatgatgggaaccttattct 216  Q
    ||||||||||||||||||||||||||||| |||| ||   |||||| ||||||||||||||||||||||||||||||| |||| |||| |||||||||||    
T  36288411 ttcttgatggacaaaacaacgaggtttggtcaagcaacgcatcgaagatttcgataaataattcacaagctgttcttcataataatggaaaccttattct 36288510  T
Q  217 ttctgatagagaaaataacaaagagatttggcaaagctttgaagatccaactgatacatatcttccaggtatggaagtttcggcgagtggtggaagtgga 316  Q
    ||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| | ||| ||| ||||||| ||||    
T  36288511 ttcagatagagaaaataacaaagagatttggcaaagttttgaagatccaactgatacatatcttccaggtatgaaagctccggtgagcggtggaaatgga 36288610  T
Q  317 attgggaaggatgctactttttgttcatggaaatcagaggaagatccttcatttggaaactatacaatgagtgttgat 394  Q
    |||||||||||||| |||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||    
T  36288611 attgggaaggatgcaactttttgttcatggaaatcagagaatgatccttcattaggaaactatacaatgagtgttgat 36288688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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