View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8261_low_25 (Length: 381)
Name: NF8261_low_25
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8261_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 6 - 367
Target Start/End: Original strand, 43407809 - 43408170
Alignment:
| Q |
6 |
agacataaaagctaagtagctactatatggccaatatctgtacttcttatgattcatgactcatgagtagggaatgatagacattttcatcttacaaaaa |
105 |
Q |
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| T |
43407809 |
agacataaaagctaagtagctattatatggccaatatctgtacttcttatgattcatgactcatgagtagggaatgatagacattttcatcttacaaaaa |
43407908 |
T |
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| Q |
106 |
agtcttgctctagcatctgcaaaccacatgctaaccaaatatgcaacattataaactgtaaagtaaaagtgaacagcaatgtgttccataatgttatggg |
205 |
Q |
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| T |
43407909 |
agtcttgctctagcatctgcaaaccacatgctaaccaaatatgcaacattataaactgtaaagtaaaagtgaacagcaatgtgttccataatgttatggg |
43408008 |
T |
|
| Q |
206 |
ccacgctatacgtcttaaatttgcatgtccagcctggtttgttaagggctcaggctattctttgacacaagtaagaaaaaagacacacatgcttggccac |
305 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43408009 |
ccacgctatacgtcttgaatttgcatgtccagcctggtttgttaagggctcaggctattctttgacacaagtaagaaaaaagacacacatgcttggccac |
43408108 |
T |
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| Q |
306 |
acacactatcttcattgtctctactctagacacacactgcgtgcttcttctaccaaatttct |
367 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43408109 |
acacactatcttcattgtctctactctagacacacactgcgtgcttcttctaccaaatttct |
43408170 |
T |
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