View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8261_low_26 (Length: 367)
Name: NF8261_low_26
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8261_low_26 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 16 - 359
Target Start/End: Complemental strand, 3909248 - 3908905
Alignment:
| Q |
16 |
attaattgaagtggtgctgatagtactccataaagattgatcagaggctctgttgttaccactattgatgaagttttgaggccaattttcattataagca |
115 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
3909248 |
attaattgaagtggtgctgatagtactccataaagattgatcagaggctctgttgttaccactattgatgaagctttgaggccaattttcattataagca |
3909149 |
T |
|
| Q |
116 |
gtagaaacagtagcaacagaagtagtagcattaaccatgctagatggaggaatcaaattcaaacctcgtggttgagaggtaaacattggtcctgatccat |
215 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3909148 |
gtagaaacagtagcaacagaagtagtagcattaaccatggtagatggaggaatcaaattcaaacctcgtggttgagaggtaaacattggtcctgatccat |
3909049 |
T |
|
| Q |
216 |
taccacctagttgaaagaattgttgcggaggtggacgattttgtccttgtgatgagcttacaagagcagcagcagcaacattgaaaccttgtaaaaggct |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3909048 |
taccacctagttgaaagaattgttgcggaggtggacgattttgtccttgtgatgagcttacaagagcagcagcagcaacattgaaaccttgtaaaaggct |
3908949 |
T |
|
| Q |
316 |
caaatttgaagaagaaccaagaccaagaccaactccaacaccaa |
359 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3908948 |
caaatttgaagaagaaccaagaccaagaccaactccaacaccaa |
3908905 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University