View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8261_low_28 (Length: 346)
Name: NF8261_low_28
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8261_low_28 |
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| [»] scaffold0045 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 327
Target Start/End: Complemental strand, 25793710 - 25793400
Alignment:
| Q |
17 |
acatcatgaggtgtgttgctgatgaacaatccatataagcccatgccaaaaatcaacataacagtaccagcaagataaacatctgcagcagaaagattca |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25793710 |
acatcatgaggtgtgttgctgatgaacaatccatataagcccatgccaaaaatcaacataacagtaccagcaagataaacatctgcagcagaaagattca |
25793611 |
T |
|
| Q |
117 |
tacattttattgaattcaagaaagactaaatggaagcagtaaactattatcagaaaatgggacaaaaatttaagcattatactccctccgtatcatgatt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||| |
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| T |
25793610 |
tacattttattgaattcaagaaagactaaatggaagcagtaaactattatcagaaaatgggacaaaaatttaagcattatactccctccatctcatgatt |
25793511 |
T |
|
| Q |
217 |
ttgaaggactgcaagttactaaattttcggccgtttcaagaaactctataatannnnnnngttcctagtggtcagattatgtatgaaaaatgataaattt |
316 |
Q |
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| |||||||||||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
25793510 |
tggaaggactgcaagttactaaattttcggccatttcaagaaactctttaatatttttttgttcctagtggtcagattatgtatgaaaaatgataaattt |
25793411 |
T |
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| Q |
317 |
accaattgctt |
327 |
Q |
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||||||||||| |
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| T |
25793410 |
accaattgctt |
25793400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 79; Significance: 7e-37; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 19 - 129
Target Start/End: Original strand, 10377945 - 10378055
Alignment:
| Q |
19 |
atcatgaggtgtgttgctgatgaacaatccatataagcccatgccaaaaatcaacataacagtaccagcaagataaacatctgcagcagaaagattcata |
118 |
Q |
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|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| | ||||||| |
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| T |
10377945 |
atcatgaggtgtgttgctaatgaacaatccatataagcccaaaccaaaaatcaacataacagtaccagcaagataaacatctgcagcaataggattcatt |
10378044 |
T |
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| Q |
119 |
cattttattga |
129 |
Q |
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|||||||||| |
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| T |
10378045 |
tattttattga |
10378055 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 10075282 - 10075174
Alignment:
| Q |
20 |
tcatgaggtgtgttgctgatgaacaatccatataagcccatgccaaaaatcaacataacagtaccagcaagataaacatctgcagcagaaagattcatac |
119 |
Q |
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||||||||| |||||||||| |||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
10075282 |
tcatgaggtatgttgctgataaacaatccatataaacccattataaaaatcaacataacagtaccagcaagataaacatctgcagcagcaagattcattt |
10075183 |
T |
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| Q |
120 |
attttattg |
128 |
Q |
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||||||||| |
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| T |
10075182 |
attttattg |
10075174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 10136837 - 10136729
Alignment:
| Q |
20 |
tcatgaggtgtgttgctgatgaacaatccatataagcccatgccaaaaatcaacataacagtaccagcaagataaacatctgcagcagaaagattcatac |
119 |
Q |
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|||||||| | |||| |||| ||||||||||||| | ||| ||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
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| T |
10136837 |
tcatgaggcgcgttggtgataaacaatccatatatacgcattccaaaaatcaacataacggtaccagcaagataaacatctgcagcagcaagattcattt |
10136738 |
T |
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| Q |
120 |
attttattg |
128 |
Q |
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||||||||| |
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| T |
10136737 |
attttattg |
10136729 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 20 - 128
Target Start/End: Complemental strand, 10134202 - 10134094
Alignment:
| Q |
20 |
tcatgaggtgtgttgctgatgaacaatccatataagcccatgccaaaaatcaacataacagtaccagcaagataaacatctgcagcagaaagattcatac |
119 |
Q |
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|||||||||||||||||||| ||||||||||| ||| ||| || ||||||||||||| ||||||||||||||||||||||||||| |||| |||| |
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| T |
10134202 |
tcatgaggtgtgttgctgataaacaatccataaaagaacattccgaaaatcaacataatggtaccagcaagataaacatctgcagcaacaagactcattt |
10134103 |
T |
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| Q |
120 |
attttattg |
128 |
Q |
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||||||||| |
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| T |
10134102 |
attttattg |
10134094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 48 - 105
Target Start/End: Original strand, 10365502 - 10365559
Alignment:
| Q |
48 |
catataagcccatgccaaaaatcaacataacagtaccagcaagataaacatctgcagc |
105 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10365502 |
catataagcccataccaaaaatcaacataacagtaccagcaagataaacatctgcagc |
10365559 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0045 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0045
Description:
Target: scaffold0045; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 41 - 128
Target Start/End: Complemental strand, 85894 - 85807
Alignment:
| Q |
41 |
aacaatccatataagcccatgccaaaaatcaacataacagtaccagcaagataaacatctgcagcagaaagattcatacattttattg |
128 |
Q |
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|||| |||||||| | ||| ||||||||||||||||| ||||||||||||||||||| |||||||| ||||||||| ||||||||| |
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| T |
85894 |
aacattccatatatacgcattccaaaaatcaacataacggtaccagcaagataaacatttgcagcagcaagattcatttattttattg |
85807 |
T |
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