View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8261_low_29 (Length: 341)
Name: NF8261_low_29
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8261_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 11 - 201
Target Start/End: Complemental strand, 4230454 - 4230264
Alignment:
| Q |
11 |
cagagaccagaaacacagtgaaacaaaaagtcaaataaaactgaaaaatcaacacaatttccacaactttcaattccaaatgcttaatacaacatcatta |
110 |
Q |
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| T |
4230454 |
cagagaccagaaatacagtgaaacaaaaagtcaaataaaactgaaaaatcaacacaatttccacaactttcaattccaaatgcttaatacaacatcatta |
4230355 |
T |
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| Q |
111 |
atcctaattttgaatctgtataaatccatagtattacacagaacatggctaatttttcttagttttatattccttaacacatcacaacatt |
201 |
Q |
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| T |
4230354 |
atcctaattttgaatctgtataaatccatagtattacacagaacatggctaatttttcttagttttatattccttaacacatcacaacatt |
4230264 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 84; E-Value: 7e-40
Query Start/End: Original strand, 242 - 325
Target Start/End: Complemental strand, 4230221 - 4230138
Alignment:
| Q |
242 |
ttaatatatattggagaaacaagaactcacttgtaactccacagtgatggcaaggtccttgtttacccatgtctcagaaaaatg |
325 |
Q |
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| T |
4230221 |
ttaatatatattggagaaacaagaactcacttgtaactccacagtgatggcaaggtccttgtttacccatgtctcagaaaaatg |
4230138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 248 - 317
Target Start/End: Original strand, 41254471 - 41254540
Alignment:
| Q |
248 |
tatattggagaaacaagaactcacttgtaactccacagtgatggcaaggtccttgtttacccatgtctca |
317 |
Q |
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| T |
41254471 |
tatattggagaaacaagaactcacttgtaactccacagtgaaagcaaggtccttgttttcccatgtctca |
41254540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 24 - 79
Target Start/End: Complemental strand, 2749326 - 2749271
Alignment:
| Q |
24 |
cacagtgaaacaaaaagtcaaataaaactgaaaaatcaacacaatttccacaactt |
79 |
Q |
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| T |
2749326 |
cacagtgaaacaaaaagtcaaataaaactgaaaaatcaacacaattttcagaactt |
2749271 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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