View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8261_low_31 (Length: 334)
Name: NF8261_low_31
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8261_low_31 |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 34059381 - 34059723
Alignment:
| Q |
1 |
aaagacacatccatcctcttgttcctatcactatacattaccttcaaagacacttcaatcaagatattgaagacctttcaaccactccaag--------- |
91 |
Q |
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| T |
34059381 |
aaagacacatccatcctcttgttcttatcactaaacattaccttcaaagacacttcaatcaagatattgaagacctttcaaccactccaagaaacttgct |
34059480 |
T |
|
| Q |
92 |
------aagctctagctcaatcagtcattgcctctacactgattttctcttactctccagtgaatttctctcaaagggtgttaaccttttgagtgcaatt |
185 |
Q |
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|||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34059481 |
tgcaagaagctctagctcaatctgtcattgcctctacactgattttcgcttactctccagtgaatttctctcaaagggtgttaaccttttgagtgcaatt |
34059580 |
T |
|
| Q |
186 |
cttataccaattttaagaacagctttgtaagnnnnnnnggagtaaaatgccattaaaatacaacaaagtcacaaccacagatcaatctcacattttcagg |
285 |
Q |
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| T |
34059581 |
gttataccaattttaagaacagttttgtaagaaaaaaaggagtaaaatgccattaaaatacaacaaagtcacaaccacagatcaatctcacattttcagg |
34059680 |
T |
|
| Q |
286 |
caaaaccacactttgtgattcgatatcataacttctctgcttc |
328 |
Q |
| |
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|||||||||||||||||||||||||||| ||||| | |||||| |
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| T |
34059681 |
caaaaccacactttgtgattcgatatcacaacttttttgcttc |
34059723 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 90 - 214
Target Start/End: Original strand, 6504910 - 6505034
Alignment:
| Q |
90 |
agaagctctagctcaatcagtcattgcctctacactgattttctcttactctccagtgaatttctctcaaagggtgttaaccttttgagtgcaattctta |
189 |
Q |
| |
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|||||||||||||| || || |||||||| ||| || ||| || |||||||| | ||||| |||||||||||||||| |||||| | |||||| | | |
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| T |
6504910 |
agaagctctagctccatttgtatttgcctcttcaccgactttttcctactctccggcgaattgctctcaaagggtgttagccttttaaccgcaattatga |
6505009 |
T |
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| Q |
190 |
taccaattttaagaacagctttgta |
214 |
Q |
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|||| ||| |||||||| |||||| |
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| T |
6505010 |
gaccattttcaagaacagttttgta |
6505034 |
T |
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