View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8261_low_32 (Length: 326)
Name: NF8261_low_32
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8261_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 276; Significance: 1e-154; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 19 - 310
Target Start/End: Original strand, 1200535 - 1200825
Alignment:
| Q |
19 |
catgttagttgaagaattagaattgcatactgatttgatttccactatcaaagttcccatcatgcccatgacaattaaagaattggaaatcctcactcat |
118 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1200535 |
catgttagttgaagaattagaattgcatactgatttgatttccactatcaaagttcccatcatgcccatgacaattaaagaattggaaatcctcactcat |
1200634 |
T |
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| Q |
119 |
tcaattcctctctataatgttcccacccccgccaaatctttttgtttcgaaaacctaaaacttctcaaattgtgtggaatcaactttaaaaatgactcac |
218 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1200635 |
tcaattcctctctataatgttcccacccccgccaaatctttttgtttcgaaaacctaaaacttctcaaattgtgtggaatcaactttaaaaatgactcac |
1200734 |
T |
|
| Q |
219 |
ccaaataccctagctctattctgcttagtttcccactcctaacaaaatttgaggccaaaaactgtgattggtttctaaaagaatctgatgtc |
310 |
Q |
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|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
1200735 |
ccaaataccctagctc-attctgcttagtttcccactcctaacaaaatttgaggccaaaaactgtgattggtttcttaaagaatctgctgtc |
1200825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 19 - 155
Target Start/End: Original strand, 1203791 - 1203916
Alignment:
| Q |
19 |
catgttagttgaagaattagaattgcatactgatttgatttccactatcaaagttcccatcatgcccatgacaattaaagaattggaaatcctcactcat |
118 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| ||||||||| ||||||||||||||||||| || ||||||||||| |
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| T |
1203791 |
catgttagttgaagaattagaattgctcactgatttgatttccaccatcaaagtt-----------catgacaattaaagaattgaaattcctcactcat |
1203879 |
T |
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| Q |
119 |
tcaattcctctctataatgttcccacccccgccaaat |
155 |
Q |
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| T |
1203880 |
tctatttctctctatgatgttcccactcccaccaaat |
1203916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 219 - 265
Target Start/End: Original strand, 1203911 - 1203957
Alignment:
| Q |
219 |
ccaaataccctagctctattctgcttagtttcccactcctaacaaaa |
265 |
Q |
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| T |
1203911 |
ccaaataccctggctctattctgcttagtttcccactcctaacaaaa |
1203957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 159 - 208
Target Start/End: Original strand, 1214033 - 1214082
Alignment:
| Q |
159 |
tttgtttcgaaaacctaaaacttctcaaattgtgtggaatcaactttaaa |
208 |
Q |
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||||||| ||||||||||||| |||||| |||||||||||| |||||||| |
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| T |
1214033 |
tttgttttgaaaacctaaaacatctcaagttgtgtggaatccactttaaa |
1214082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 180 - 224
Target Start/End: Original strand, 580484 - 580528
Alignment:
| Q |
180 |
ttctcaaattgtgtggaatcaactttaaaaatgactcacccaaat |
224 |
Q |
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| T |
580484 |
ttctcaacttgtgtggaatcaactttaacaccgactcacccaaat |
580528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 248 - 292
Target Start/End: Original strand, 580552 - 580596
Alignment:
| Q |
248 |
ttcccactcctaacaaaatttgaggccaaaaactgtgattggttt |
292 |
Q |
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| T |
580552 |
ttccctctcctaacaaaatttgaggctaaaaactgcgcttggttt |
580596 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 150 - 292
Target Start/End: Complemental strand, 8192934 - 8192787
Alignment:
| Q |
150 |
ccaaatctttttgtttcgaaaacctaaaacttctcaaattgtgtggaatcaactttaaaaatgactcacccaaataccctagctctatt---ct---gct |
243 |
Q |
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|||||||| || |||| ||||||||||||||||||| |||||||||||| |||||| | | |||| ||||||| ||||| || |||| || ||| |
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| T |
8192934 |
ccaaatctattcgttttcaaaacctaaaacttctcaagttgtgtggaatcttctttaacactcactcgcccaaatcccctaactatattaaacttaagct |
8192835 |
T |
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| Q |
244 |
tagtttcccactcctaacaaaatttgaggccaaaaactgtgattggttt |
292 |
Q |
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||| |||||||| ||||||||||||||| |||||||||| | ||||||| |
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| T |
8192834 |
tag-ttcccacttctaacaaaatttgagaccaaaaactgcgcttggttt |
8192787 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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