View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8261_low_38 (Length: 284)
Name: NF8261_low_38
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8261_low_38 |
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Alignment Details
Target: chr1 (Bit Score: 247; Significance: 1e-137; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 14 - 260
Target Start/End: Original strand, 39032135 - 39032381
Alignment:
| Q |
14 |
catttctctctttgtcactccaagattcaagaatagaaaactcaagatagcaataaatatcatcaccatcattacaatcaagagtgtcaatccctttcct |
113 |
Q |
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| T |
39032135 |
catttctctctttgtcactccaagattcaagaatagaaaactcaagatagcaataaatatcatcaccatcattacaatcaagagtgtcaatccctttcct |
39032234 |
T |
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| Q |
114 |
ttatgacttggattaaagatgagagatccattttgtgggacagctaacacatgcacctgatatttaataaaattagttagagataagaaaaatattcagt |
213 |
Q |
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| T |
39032235 |
ttatgacttggattaaagatgagagatccattttgtgggacagctaacacatgcacctgatatttaataaaattagttagagataagaaaaatattcagt |
39032334 |
T |
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| Q |
214 |
tacatgttaattgatacatacatgacatttgtcaacatatttggata |
260 |
Q |
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| T |
39032335 |
tacatgttaattgatacatacatgacatttgtcaacatatttggata |
39032381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 248 - 284
Target Start/End: Original strand, 47170986 - 47171022
Alignment:
| Q |
248 |
acatatttggatatgtgaaactcatggttgggggagc |
284 |
Q |
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| T |
47170986 |
acatatttggataggtgaaactcatggttgggggagc |
47171022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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