View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8261_low_40 (Length: 278)
Name: NF8261_low_40
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8261_low_40 |
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Alignment Details
Target: chr4 (Bit Score: 233; Significance: 1e-129; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 233; E-Value: 1e-129
Query Start/End: Original strand, 19 - 263
Target Start/End: Original strand, 27262102 - 27262346
Alignment:
| Q |
19 |
gagagtacatctctggtgccattctctttgaggagactctctaccaatccacaacagatggaaggaagattgtcgatgtacttattgagtaaaacattgt |
118 |
Q |
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| T |
27262102 |
gagagtacatctctggtgccattctctttgaggagactctctaccaatccacaacagatggaaggaagattgtggatgtacttattgagtaaaacattgt |
27262201 |
T |
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| Q |
119 |
tcctggtattaaagttgacaaggtatatctagaattactctatgtaactacattttttgttagatgatgaattttcaatttgtactatgctgaacaaata |
218 |
Q |
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| T |
27262202 |
tcctgatattaaagttgacaaggtatatctggaattactctatgtaactacattttttgttagatgatgaattttcaatttgtactatgctgaacaaata |
27262301 |
T |
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| Q |
219 |
atgcaaagaataagaccgagtgctagttgataccattatgatgtc |
263 |
Q |
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| T |
27262302 |
atgcaaagaataagaccgagtgctagttgataccattatgatgtc |
27262346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 21194508 - 21194624
Alignment:
| Q |
27 |
atctctggtgccattctctttgaggagactctctaccaatccacaacagatggaaggaagattgtcgatgtacttattgagtaaaacattgttcctggta |
126 |
Q |
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| T |
21194508 |
atctctggtgccattctatttgaggaaactctctaccaatctacagttgatggaaggaagattgttgacgtgcttatcgagcaaaacattgttcctggaa |
21194607 |
T |
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| Q |
127 |
ttaaagttgacaaggta |
143 |
Q |
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| T |
21194608 |
tcaaagttgacaaggta |
21194624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 27 - 143
Target Start/End: Original strand, 27250281 - 27250397
Alignment:
| Q |
27 |
atctctggtgccattctctttgaggagactctctaccaatccacaacagatggaaggaagattgtcgatgtacttattgagtaaaacattgttcctggta |
126 |
Q |
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||||||||||||||||| |||||||| |||||||||||||| ||| ||||||||||||||||| || || ||||| ||| |||||||||||||||| | |
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| T |
27250281 |
atctctggtgccattctttttgaggaaactctctaccaatctacagttgatggaaggaagattgttgacgtgcttatcgagcaaaacattgttcctggaa |
27250380 |
T |
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| Q |
127 |
ttaaagttgacaaggta |
143 |
Q |
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| T |
27250381 |
tcaaagttgacaaggta |
27250397 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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