View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8261_low_43 (Length: 262)
Name: NF8261_low_43
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8261_low_43 |
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Alignment Details
Target: chr1 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 14 - 255
Target Start/End: Complemental strand, 52768832 - 52768591
Alignment:
| Q |
14 |
catcagaaataaggggaggacttgtagccacaaacgtgcttatgataactggtggacagtttatttcttatctagtaaatctttcttttacgcaggttta |
113 |
Q |
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| T |
52768832 |
catcagaaataaggggaggacttgtagccacaaacgtgcttatgataactggtggacagtttatttcttatctagtaaatctttcttttacgcaggttta |
52768733 |
T |
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| Q |
114 |
ttttccacacttttctctttcatccattttcattaaaatatctttgacatcgtatcccatttaactgcatatagctcttatttagaagtacgaaagccaa |
213 |
Q |
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| T |
52768732 |
ttttccacacttgtctctttcatccattttcattaaaatatctttgacattgtatcccatttaactgcatatagctcttatttagaagtacgaaagccaa |
52768633 |
T |
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| Q |
214 |
tttctcccttgtcgaattgatttttccttgttctctctgctt |
255 |
Q |
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| T |
52768632 |
tttctcccttgtcgaattgatttttccttgttctctatgctt |
52768591 |
T |
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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 42 - 96
Target Start/End: Complemental strand, 38013765 - 38013711
Alignment:
| Q |
42 |
cacaaacgtgcttatgataactggtggacagtttatttcttatctagtaaatctt |
96 |
Q |
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| T |
38013765 |
cacaaatgtgcttatgataactggtggacagtttctttcttacctcgtaaatctt |
38013711 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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