View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8261_low_5 (Length: 584)
Name: NF8261_low_5
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8261_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 17 - 566
Target Start/End: Original strand, 37629324 - 37629878
Alignment:
| Q |
17 |
atcaatgaaggaatttgctttgaagctagagacacttgcagaggagctactagacttattatgtgaaaatcttggactagaaaaggggtacctaaaaaag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37629324 |
atcaatgaaggaatttgctttgaagctagagacacttgcagaggagctactagacttattatgtgaaaatcttggactagaaaaggggtacctaaaaaag |
37629423 |
T |
|
| Q |
117 |
gctttgtatggatcaaagggaccaacttttggaaccaaggttgcaaactaccctccatgcccaaaaccagaccttgtaaagggtctccgtgcacacaccg |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37629424 |
gctttgtatggatcaaagggaccaacttttggaaccaaggttgcaaactaccctccatgcccaaaaccagaccttgtaaagggtctccgtgcacacaccg |
37629523 |
T |
|
| Q |
217 |
atgccggtggaatcatccttcttttccaagatgacatggtcagtggccttcagcttctcaaagatggtaactgggtagatgtccctcccatgcatcattc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37629524 |
atgccggtggaatcatccttcttttccaagatgacaaggtcagtggccttcagcttctcaaagatggtaactgggtagatgtccctcccatgcatcattc |
37629623 |
T |
|
| Q |
317 |
cattgtcatcaaccttggtgaccaacttgaggt--nnnnnnnnncattcttctaaatttatattaacatttttacaaacatataaaatcaacaacaaatg |
414 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||| ||||||||||||||||||| |
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| T |
37629624 |
cattgtcatcaaccttggtgaccaacttgaggtaaaaaaaaaaacattcttctaaatttatattgacatttttacaaac--ataaaatcaacaacaaatg |
37629721 |
T |
|
| Q |
415 |
attcatatcaagcattaa-----nnnnnnnnnnnnnnaatgtgacaggtaataacaaatggtaagtacaaaagtgtggaacaccgtgtggtagcacaaac |
509 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
37629722 |
attcatatcaagcattaattttttattttttatttttaatgtgacaggtaataacaaatggcaagtacaaaagtgtggaacaccgtgtggtagcacaaac |
37629821 |
T |
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| Q |
510 |
tgatggaacaagaatgtctatagcctcattctacaaccctggtagtgatgctgttat |
566 |
Q |
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| T |
37629822 |
tgatggaacaagaatgtctatagcctcattctacaaccctggtagtgatgctgttat |
37629878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 114; Significance: 2e-57; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 114; E-Value: 2e-57
Query Start/End: Original strand, 20 - 349
Target Start/End: Complemental strand, 36872220 - 36871891
Alignment:
| Q |
20 |
aatgaaggaatttgctttgaagctagagacacttgcagaggagctactagacttattatgtgaaaatcttggactagaaaaggggtacctaaaaaaggct |
119 |
Q |
| |
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||||||||||||| || ||| | |||||| ||| ||||| ||||| | || || |||||||| |||||||||||||| || || ||||| |||||||| |
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| T |
36872220 |
aatgaaggaattttctctgaggttagagaaactagcagaagagcttttggatttgttatgtgagaatcttggactagagaaaggttaccttaaaaaggca |
36872121 |
T |
|
| Q |
120 |
ttgtatggatcaaagggaccaacttttggaaccaaggttgcaaactaccctccatgcccaaaaccagaccttgtaaagggtctccgtgcacacaccgatg |
219 |
Q |
| |
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|| |||||||||| |||||||||||||| ||||| || || |||||||||| ||||||||| ||||| || || |||||||| ||||| |||||||||| |
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| T |
36872120 |
ttttatggatcaagaggaccaacttttggcaccaaagtagccaactaccctcaatgcccaaatccagagctggtgaagggtcttcgtgctcacaccgatg |
36872021 |
T |
|
| Q |
220 |
ccggtggaatcatccttcttttccaagatgacatggtcagtggccttcagcttctcaaagatggtaactgggtagatgtccctcccatgcatcattccat |
319 |
Q |
| |
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|||| |||||||||||||| ||||| ||||| | |||||||||||| || | ||||||||||| | ||||| ||||| || || |||| || ||||| |
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| T |
36872020 |
ccggaggaatcatccttctcttccaggatgataaggtcagtggcctacaattgctcaaagatggccagtgggttgatgttcccccaatgcgccactccat |
36871921 |
T |
|
| Q |
320 |
tgtcatcaaccttggtgaccaacttgaggt |
349 |
Q |
| |
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|| ||||||||||||||||||||||||| |
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| T |
36871920 |
cgttgtcaaccttggtgaccaacttgaggt |
36871891 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 453 - 563
Target Start/End: Complemental strand, 36871303 - 36871193
Alignment:
| Q |
453 |
acaggtaataacaaatggtaagtacaaaagtgtggaacaccgtgtggtagcacaaactgatggaacaagaatgtctatagcctcattctacaaccctggt |
552 |
Q |
| |
|
|||||||||||||||||| |||||||| |||||||||||||||||| |||||||||| |||||||||||||||| ||||| ||||||||||||||||| |
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| T |
36871303 |
acaggtaataacaaatggcaagtacaagagtgtggaacaccgtgtgatagcacaaacaaatggaacaagaatgtccatagcatcattctacaaccctggg |
36871204 |
T |
|
| Q |
553 |
agtgatgctgt |
563 |
Q |
| |
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||||||||||| |
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| T |
36871203 |
agtgatgctgt |
36871193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 87; Significance: 2e-41; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 19 - 349
Target Start/End: Original strand, 8926782 - 8927112
Alignment:
| Q |
19 |
caatgaaggaatttgctttgaagctagagacacttgcagaggagctactagacttattatgtgaaaatcttggactagaaaaggggtacctaaaaaaggc |
118 |
Q |
| |
|
|||||||||||||||| ||| | |||| ||| |||||||| || || |||||||| ||||| ||||||||||| || || |||||| | || || | |
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| T |
8926782 |
caatgaaggaatttgcagagaaattggagaaactggcagaggaacttcttgacttattgtgtgagaatcttggacttgagaaagggtacttgaagaaagt |
8926881 |
T |
|
| Q |
119 |
tttgtatggatcaaagggaccaacttttggaaccaaggttgcaaactaccctccatgcccaaaaccagaccttgtaaagggtctccgtgcacacaccgat |
218 |
Q |
| |
|
|| |||||||||||||| |||| |||||| || || ||| ||||||||||| || || || || || || | ||||| || | |||||||| ||| |
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| T |
8926882 |
gttttatggatcaaagggtccaaattttggtacaaaagttagtaactaccctccttgtcctaagcctgatctcatcaagggacttagagcacacacagat |
8926981 |
T |
|
| Q |
219 |
gccggtggaatcatccttcttttccaagatgacatggtcagtggccttcagcttctcaaagatggtaactgggtagatgtccctcccatgcatcattcca |
318 |
Q |
| |
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|| ||||| ||||||||||| ||||||||||||| |||||||| ||||||||||||||||||| | ||| | ||||||||||| |||| ||| || | |
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| T |
8926982 |
gctggtggcatcatccttctcttccaagatgacaaagtcagtggacttcagcttctcaaagatgaccaatggattgatgtccctccaatgcctcactcta |
8927081 |
T |
|
| Q |
319 |
ttgtcatcaaccttggtgaccaacttgaggt |
349 |
Q |
| |
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||||||||||||||||||||||||||||||| |
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| T |
8927082 |
ttgtcatcaaccttggtgaccaacttgaggt |
8927112 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 240 - 349
Target Start/End: Original strand, 55528092 - 55528201
Alignment:
| Q |
240 |
ttccaagatgacatggtcagtggccttcagcttctcaaagatggtaactgggtagatgtccctcccatgcatcattccattgtcatcaaccttggtgacc |
339 |
Q |
| |
|
||||||||||||| ||| | || |||||||| || |||||||| | ||| | |||||||| || |||| ||||||||||| |||||||||||||||| |
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| T |
55528092 |
ttccaagatgacaaggttggcggacttcagctccttaaagatggccaatggattgatgtcccaccaatgcgccattccattgttatcaaccttggtgacc |
55528191 |
T |
|
| Q |
340 |
aacttgaggt |
349 |
Q |
| |
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|| ||||||| |
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| T |
55528192 |
aaattgaggt |
55528201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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