View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8261_low_51 (Length: 235)
Name: NF8261_low_51
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8261_low_51 |
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Alignment Details
Target: chr4 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 46 - 222
Target Start/End: Original strand, 9910516 - 9910704
Alignment:
| Q |
46 |
ttaagacatataattatttgcagatgatcttcataatatgaacgacgatgcaagctctcaaagctcaacgaattccttcaagtctttcaattaccat--- |
142 |
Q |
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| T |
9910516 |
ttaagacatagaactatttgcagatgatcttcaatatatgaacgacgatgcaagctctcaaagctcaacgaattccttcaagtctttcaattaccattgc |
9910615 |
T |
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| Q |
143 |
---------tgcaatgaagatgaccaaggtacaaatctagtagtaggagaagaacctctttgttgcaatccaaagagtcacaacaaatg |
222 |
Q |
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| T |
9910616 |
aatgattcatgcaatgaagatgaccaaggtacaaatcaagtagtaggagaagaacctctttgttgcaatccgaagagtcacaacaaatg |
9910704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 9910412 - 9910454
Alignment:
| Q |
1 |
tctttgtttgcgttttttgtatctttaattttgaacaagaatt |
43 |
Q |
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| T |
9910412 |
tctttgtttgcgttttttgtatctttaattttgaaccagaatt |
9910454 |
T |
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