View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8261_low_52 (Length: 234)
Name: NF8261_low_52
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8261_low_52 |
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Alignment Details
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 17 - 216
Target Start/End: Complemental strand, 29455697 - 29455500
Alignment:
| Q |
17 |
acatcaattaaacacatatatacggtcaataaacaaaccaacaacctttaaattaatcaaagtagaggacacaacattttctatgagaaaaggtataaac |
116 |
Q |
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| T |
29455697 |
acatcaattaaaca--tatatacggtcaataaacaaaccaacaacctttaaattaatcaaagtagaggacaacacattttttatgagaaaaggtataaac |
29455600 |
T |
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| Q |
117 |
aagaaggattttagagacttgcaatattgagaaaagggaagttcagctgtggaacagttcaacagtagaaggacttcacaatctgcttcaaaggaattca |
216 |
Q |
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| T |
29455599 |
aagaaggattttagagacttgcaatattgagaaaaggaaagttcagctgtgtaacagttcaacagtagaaggacttcacaatctgcctcaaaggaattca |
29455500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 158 - 216
Target Start/End: Complemental strand, 29448256 - 29448198
Alignment:
| Q |
158 |
ttcagctgtggaacagttcaacagtagaaggacttcacaatctgcttcaaaggaattca |
216 |
Q |
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| T |
29448256 |
ttcagctgcggaacagttcaacagtagaagtacttctcaatctgcctcagaggaattca |
29448198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 47 - 97
Target Start/End: Complemental strand, 29448304 - 29448254
Alignment:
| Q |
47 |
aaacaaaccaacaacctttaaattaatcaaagtagaggacacaacattttc |
97 |
Q |
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| T |
29448304 |
aaacaaaccaacaacatttacattaatcaaagtagacgacacaacattttc |
29448254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 66 - 187
Target Start/End: Original strand, 37458101 - 37458222
Alignment:
| Q |
66 |
aaattaatcaaagtagaggacacaacattttctatgagaaaaggtataaacaagaaggattttagagacttgcaatattgagaaaagggaagttcagctg |
165 |
Q |
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| T |
37458101 |
aaattaatcaaagtagacgacaaaacgttgtctatgagaaaaggtatagacaagaagggttttagtgacttacaatagttagaaaggggaagttcagctg |
37458200 |
T |
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| Q |
166 |
tggaacagttcaacagtagaag |
187 |
Q |
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| T |
37458201 |
cggaacagttcaaccgtagaag |
37458222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 1e-28; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 43 - 187
Target Start/End: Complemental strand, 8570761 - 8570617
Alignment:
| Q |
43 |
caataaacaaaccaacaacctttaaattaatcaaagtagaggacacaacattttctatgagaaaaggtataaacaagaaggattttagagacttgcaata |
142 |
Q |
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| T |
8570761 |
caataaacaaactagcaaggtttaaattaatcaaagtaaacgacaaagcgttttatatgagaaaaggtataaacaagacgggttttagagacttaaaata |
8570662 |
T |
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| Q |
143 |
ttgagaaaagggaagttcagctgtggaacagttcaacagtagaag |
187 |
Q |
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| T |
8570661 |
gtgagaaaagggaagctcaactgcgaaacagttcaatagtagaag |
8570617 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 33 - 82
Target Start/End: Complemental strand, 11990012 - 11989963
Alignment:
| Q |
33 |
tatatacggtcaataaacaaaccaacaacctttaaattaatcaaagtaga |
82 |
Q |
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|||| |||| ||||||||||||||||||| ||||||||||||||||||| |
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| T |
11990012 |
tataaacgggcaataaacaaaccaacaacggttaaattaatcaaagtaga |
11989963 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 187
Target Start/End: Complemental strand, 11989949 - 11989895
Alignment:
| Q |
133 |
acttgcaatattgagaaaagggaagttcagctgtggaacagttcaacagtagaag |
187 |
Q |
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|||| ||||| |||||||||||||||||||||| ||||||||||| ||||||| |
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| T |
11989949 |
acttacaatagtgagaaaagggaagttcagctgcagaacagttcaatggtagaag |
11989895 |
T |
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