View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8261_low_54 (Length: 231)
Name: NF8261_low_54
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8261_low_54 |
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Alignment Details
Target: chr1 (Bit Score: 192; Significance: 1e-104; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 19 - 214
Target Start/End: Original strand, 42286221 - 42286416
Alignment:
| Q |
19 |
attctttggaatcagagaagaaaatcaaagtcaaataacacatcatcatcctcatcctcaatcaactactacttctgctacttcctcagctccttcaacc |
118 |
Q |
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| T |
42286221 |
attctttggaatcagagaagaaaatcaaagtcaaataacacatcatcatcctcatcctcaatcaactactacttctgctacttcctcagctccttcaacc |
42286320 |
T |
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| Q |
119 |
acagttcctcaaaagaaaagaaggaatcaacctggaacaccaagcaagtagcttaattatttttattttcattattacttaaaacttcaacatgca |
214 |
Q |
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| T |
42286321 |
acagttcctcaaaagaaaagaaggaatcaacctggaacaccaagcaagtagcttaattatttttattttcattattacttaaagcttcaacatgca |
42286416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 168
Target Start/End: Complemental strand, 12805411 - 12805364
Alignment:
| Q |
121 |
agttcctcaaaagaaaagaaggaatcaacctggaacaccaagcaagta |
168 |
Q |
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||||||||| || |||||||| |||||||||||||||||| ||||||| |
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| T |
12805411 |
agttcctcagaaaaaaagaagaaatcaacctggaacaccatgcaagta |
12805364 |
T |
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