View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8261_low_56 (Length: 215)
Name: NF8261_low_56
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8261_low_56 |
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Alignment Details
Target: chr4 (Bit Score: 182; Significance: 1e-98; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 1e-98
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 3111458 - 3111639
Alignment:
| Q |
20 |
cattcattgaagttttgaagctatgatccactttatcatcaatcaccttaatttctctccttacaagttcttgcatcaaaccacctttcctgctaagaac |
119 |
Q |
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| T |
3111458 |
cattcattgaagttttgaagctatgatccactttatcatcaatcaccttaatttctctccttacaagttcttgcatcaaaccacctttcctgctaagaac |
3111557 |
T |
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| Q |
120 |
aacagctgaaacatttgctccacaactcatcaattcagttgccaattccatcattgaaagtggtgctccagtcatagaaagt |
201 |
Q |
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| T |
3111558 |
aacagctgaaacatttgctccacaactcatcaattcagttgccaattccatcattgaaagtggtgctccagtcatagaaagt |
3111639 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 22 - 200
Target Start/End: Complemental strand, 26269650 - 26269472
Alignment:
| Q |
22 |
ttcattgaagttttgaagctatgatccactttatcatcaatcaccttaatttctctccttacaagttcttgcatcaaaccacctttcctgctaagaacaa |
121 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| |||||||||||||||||||||||||||||||||| |
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| T |
26269650 |
ttcattgaagttttgaagctatgatccactttatcatcaatcaccttaatttgtctcctaacaagctcttgcatcaaaccacctttcctgctaagaacaa |
26269551 |
T |
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| Q |
122 |
cagctgaaacatttgctccacaactcatcaattcagttgccaattccatcattgaaagtggtgctccagtcatagaaag |
200 |
Q |
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| T |
26269550 |
cagctgaaacatttgctccacaactcaaaagttcagttgccaactccatcattgaaagtggtgctccagtcatagaaag |
26269472 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 93 - 200
Target Start/End: Complemental strand, 44061684 - 44061577
Alignment:
| Q |
93 |
catcaaaccacctttcctgctaagaacaacagctgaaacatttgctccacaactcatcaattcagttgccaattccatcattgaaagtggtgctccagtc |
192 |
Q |
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|||||||||||||||||||||||| ||||||| |||| | | || ||||| |||| | || ||||||||||||| |||||| ||||| ||||| ||| |
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| T |
44061684 |
catcaaaccacctttcctgctaagtgcaacagccgaaatagtggcaccacagctcaaaagctctgttgccaattccaacattgagagtggagctccggtc |
44061585 |
T |
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| Q |
193 |
atagaaag |
200 |
Q |
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|| ||||| |
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| T |
44061584 |
atggaaag |
44061577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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