View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8261_low_57 (Length: 201)

Name: NF8261_low_57
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8261_low_57
NF8261_low_57
[»] chr6 (10 HSPs)
chr6 (14-182)||(30955407-30955575)
chr6 (14-182)||(30945147-30945315)
chr6 (131-182)||(30961152-30961203)
chr6 (131-182)||(30992634-30992685)
chr6 (146-182)||(31224657-31224693)
chr6 (145-182)||(31145397-31145434)
chr6 (145-182)||(31171710-31171747)
chr6 (145-182)||(31189455-31189492)
chr6 (145-182)||(31201262-31201299)
chr6 (145-182)||(31229937-31229974)
[»] chr1 (3 HSPs)
chr1 (131-168)||(49215589-49215626)
chr1 (131-168)||(49714567-49714604)
chr1 (128-176)||(9495608-9495656)


Alignment Details
Target: chr6 (Bit Score: 157; Significance: 1e-83; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 14 - 182
Target Start/End: Complemental strand, 30955575 - 30955407
Alignment:
Q  14 atggacatcactatgtcaggtctcaaatcactctccttttctagcttattgtatatccaatctggaaaatactcgctagtttgatttgtgttaacatcaa 113  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30955575 atggccatcactatgtcaggtctcaaatcactctccttttctagcttattgtatatccaatctggaaaatactcgctagtttgatttgtattaacatcaa 30955476  T
Q  114 tattgtttctcactccgaccatctctaaaagcatcattccataactataaacatcagacttgtgtgaaa 182  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30955475 tattgtttctcactccaaccatctctaaaagcatcattccataactataaacatcagacttgtgtgaaa 30955407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 14 - 182
Target Start/End: Complemental strand, 30945315 - 30945147
Alignment:
Q  14 atggacatcactatgtcaggtctcaaatcactctccttttctagcttattgtatatccaatctggaaaatactcgctagtttgatttgtgttaacatcaa 113  Q
    |||| |||||||||||||| |||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  30945315 atggccatcactatgtcagatctcaaatcactatccgtttctagcttattgtatatccaatctggaaaatactcgctagtttgatttgttttaacatcaa 30945216  T
Q  114 tattgtttctcactccgaccatctctaaaagcatcattccataactataaacatcagacttgtgtgaaa 182  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30945215 tattgtttctcactcccaccatctctaaaagcatcattccataactataaacatcagacttgtgtgaaa 30945147  T

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Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 30961203 - 30961152
Alignment:
Q  131 accatctctaaaagcatcattccataactataaacatcagacttgtgtgaaa 182  Q
    ||||| ||||| | ||||||||||||||||||||||||||||||||||||||    
T  30961203 accatttctaacaacatcattccataactataaacatcagacttgtgtgaaa 30961152  T

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Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 131 - 182
Target Start/End: Complemental strand, 30992685 - 30992634
Alignment:
Q  131 accatctctaaaagcatcattccataactataaacatcagacttgtgtgaaa 182  Q
    ||||| ||||| | ||||||||||||||||||||||||||||||||||||||    
T  30992685 accatttctaacaacatcattccataactataaacatcagacttgtgtgaaa 30992634  T

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Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000004
Query Start/End: Original strand, 146 - 182
Target Start/End: Complemental strand, 31224693 - 31224657
Alignment:
Q  146 atcattccataactataaacatcagacttgtgtgaaa 182  Q
    |||||||||||||||||||||||||||||||||||||    
T  31224693 atcattccataactataaacatcagacttgtgtgaaa 31224657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 182
Target Start/End: Original strand, 31145397 - 31145434
Alignment:
Q  145 catcattccataactataaacatcagacttgtgtgaaa 182  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  31145397 catcattccataactataaacatcagatttgtgtgaaa 31145434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 182
Target Start/End: Original strand, 31171710 - 31171747
Alignment:
Q  145 catcattccataactataaacatcagacttgtgtgaaa 182  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  31171710 catcattccataactataaacatcagatttgtgtgaaa 31171747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 145 - 182
Target Start/End: Original strand, 31189455 - 31189492
Alignment:
Q  145 catcattccataactataaacatcagacttgtgtgaaa 182  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  31189455 catcattccataactataaacatcagatttgtgtgaaa 31189492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 182
Target Start/End: Original strand, 31201262 - 31201299
Alignment:
Q  145 catcattccataactataaacatcagacttgtgtgaaa 182  Q
    |||||||||||||||||||||||| ||||||| |||||    
T  31201262 catcattccataactataaacatcggacttgtatgaaa 31201299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 145 - 182
Target Start/End: Complemental strand, 31229974 - 31229937
Alignment:
Q  145 catcattccataactataaacatcagacttgtgtgaaa 182  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  31229974 catcattccataactataaacgtcagacttgtgcgaaa 31229937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 168
Target Start/End: Complemental strand, 49215626 - 49215589
Alignment:
Q  131 accatctctaaaagcatcattccataactataaacatc 168  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  49215626 accatttctaaaaccatcattccataactataaacatc 49215589  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 131 - 168
Target Start/End: Complemental strand, 49714604 - 49714567
Alignment:
Q  131 accatctctaaaagcatcattccataactataaacatc 168  Q
    ||||| ||||||| ||||||||||||||||||||||||    
T  49714604 accatttctaaaaccatcattccataactataaacatc 49714567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 128 - 176
Target Start/End: Complemental strand, 9495656 - 9495608
Alignment:
Q  128 ccgaccatctctaaaagcatcattccataactataaacatcagacttgt 176  Q
    |||||||||||||  | || ||||||| |||||||||||||||||||||    
T  9495656 ccgaccatctctagcaacaacattccaaaactataaacatcagacttgt 9495608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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