View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8261_low_7 (Length: 545)
Name: NF8261_low_7
Description: NF8261
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8261_low_7 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 474; Significance: 0; HSPs: 8)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 474; E-Value: 0
Query Start/End: Original strand, 18 - 542
Target Start/End: Complemental strand, 35755908 - 35755375
Alignment:
| Q |
18 |
atatgtctctacatcccaatgtggtaaactgggatgactctgctgtaaaaggggcattcaacaatgcaaaaaacaggttttgggctgagatcaatggcct |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35755908 |
atatgtctctacatcccaatgtggtaaactgggatgactctgctgtaaaagaggcattcaacaatgcaaaaaacaggttttgggctgagatcaacggcct |
35755809 |
T |
|
| Q |
118 |
tccctgtgacataccattgcctgatcctaacatatacatcgatgatgtagattggaatgcaactatcgaccctgaactatatctggatgtggaaagagaa |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| |
|
|
| T |
35755808 |
tccctgtgacataccattgcctgatcctaacatatacctcgatgatgtagattggaatgcaactattgatcctgaactatatctggatgtggaaagagaa |
35755709 |
T |
|
| Q |
218 |
gcagtagcccgccgcaacatagaagaaaaaggcgaggaggccgtgattctcagtagctcttttctcttgagtcattccttttcaggtccaggatgggggg |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35755708 |
gcagtagcccgccgcaacatagaagaaaaaggcgaggaggccgtgattctcagtagctcttttctcttgagtcattccttttcaggtccaggatgggggg |
35755609 |
T |
|
| Q |
318 |
acgaaga---------agaagttagaaaaccttctgagccaaattatgctggtcagggatgggaatcaaatcaacatgaaaataatgaaacaaactcttg |
408 |
Q |
| |
|
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35755608 |
acgaagaagaaaaagaagaagttagaaagccttctgagccaaattatgctggtcagggatgggaatcaaatcaacatgaaaataatgaaacaaactcttg |
35755509 |
T |
|
| Q |
409 |
ggaacaatatcttcctccaattgatgaacatgcaaaagaatatggttggcaaaatagtcacaatgattctcagaggtggattcagagggagcactatggt |
508 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35755508 |
ggaacaatatcttcctccaattgatgaacatgcaaaacaatatggttggcaaaatagtcacaatgattctcagaggtggattcagagggagcactatggt |
35755409 |
T |
|
| Q |
509 |
ggtgacttgcataacaagtaccaacaaggaagaa |
542 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
35755408 |
ggtgacttgcataacaagtaccaacaaggaagaa |
35755375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 18 - 528
Target Start/End: Complemental strand, 35761066 - 35760535
Alignment:
| Q |
18 |
atatgtctctacatcccaatgtggtaaactgggatgactctgctgtaaaaggggcattcaacaatgcaaaaaacaggttttgggctgagatcaatggcct |
117 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||| ||||||||||| |||| |||||| |||||||||||||||| ||||||||||||||||| | | |
|
|
| T |
35761066 |
atatgtatctgcatcccaatgtggtaaactgggacgactctgctgtcaaagaggcatttgacaatgcaaaaaacagattttgggctgagatcaacgaatt |
35760967 |
T |
|
| Q |
118 |
tccctgtgacataccattgcctgatcctaacatatacatcgatgatgtagattggaatgcaactatcgaccctgaactatatctggatgtggaaagagaa |
217 |
Q |
| |
|
|||||| |||||||||||||||||||| ||| |||| |||||||||||||||||||||| | | ||||||||||| |||| |||||||||||||||| |
|
|
| T |
35760966 |
tccctgcgacataccattgcctgatcccgacactcacattgatgatgtagattggaatgcaagtgtggaccctgaactttatcaggatgtggaaagagaa |
35760867 |
T |
|
| Q |
218 |
gcagtagcccgccgcaacatagaagaaaaaggcgaggaggccgtgattctcagtagctcttttctcttgagtcattccttttcaggtc------------ |
305 |
Q |
| |
|
|||| |||||||| ||||| |||||||||||||||| || |||||||| |||| ||| ||||||||| ||| |||||||| |||| |
|
|
| T |
35760866 |
gcagaggcccgccgtaacatggaagaaaaaggcgaggcagctgtgattcttggtagttctcttctcttgaatcagtccttttccggtcctggatggggac |
35760767 |
T |
|
| Q |
306 |
---caggatggggggacgaag------aagaagttagaaaaccttctgagccaaattatgctggtcagggatgggaatcaaatcaacatgaaaataatga |
396 |
Q |
| |
|
| |||||||||||||||| ||||||| | ||| |||||||| || |||||||||| ||||||||||||||| || ||||||||||||||||| |
|
|
| T |
35760766 |
ctactggatggggggacgaagaagaaaaagaagtaacaaagccttctgaaccgaattatgctgctcagggatgggaatcgaaccaacatgaaaataatga |
35760667 |
T |
|
| Q |
397 |
aacaaactcttgggaacaatatcttcctccaattgatgaacatgcaaaagaatatggttggcaaaatagtcacaatgattctcagaggtggattcagagg |
496 |
Q |
| |
|
|||||||||||||||||| |||| | |||| ||| ||||||| |||||||||||||||||| |||| | || ||||||| ||| | |||| ||||| | |
|
|
| T |
35760666 |
aacaaactcttgggaacagtatcgtgctcctgttgttgaacattcaaaagaatatggttggcgaaatggccaaaatgattatcatggatggaatcagacg |
35760567 |
T |
|
| Q |
497 |
gagcactatggtggtgacttgcataacaagta |
528 |
Q |
| |
|
||||| ||||||| |||||||||||||||||| |
|
|
| T |
35760566 |
gagcaatatggtgctgacttgcataacaagta |
35760535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 193; E-Value: 1e-104
Query Start/End: Original strand, 18 - 528
Target Start/End: Complemental strand, 35789856 - 35789340
Alignment:
| Q |
18 |
atatgtctctacatcccaatgtggtaaactgggatgactctgctgtaaaaggggcattcaacaatgcaaaaaacaggttttgggctgagatcaatggcct |
117 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||| || ||||| || |||| ||||||||||||||||||||||||||| |||||||||||||| | | | |
|
|
| T |
35789856 |
atatgtgtctacatcccaatgtggtaaactgggacgattctgccgtcaaagaggcattcaacaatgcaaaaaacaggttctgggctgagatcaacgacat |
35789757 |
T |
|
| Q |
118 |
tccctgtgacataccattgcctgatcctaacatatacatcgatgatgtagattggaatgcaactatcgaccctgaactatatctggatgtggaaagagaa |
217 |
Q |
| |
|
|||||| |||||||||| ||||||||||||||| ||||| |||||| |||| ||||| |||| ||||| ||||||| ||||||||||||||||||||| |
|
|
| T |
35789756 |
tccctgcgacataccatcgcctgatcctaacatttacatagatgatatagactggaacgcaagcgtcgacactgaactttatctggatgtggaaagagaa |
35789657 |
T |
|
| Q |
218 |
gcagtagcccgccgcaacatagaagaaaaaggcgaggaggccgtgattctcagtagctcttttctcttgagtcattccttttcaggtccaggatgggggg |
317 |
Q |
| |
|
| || ||| |||||||||| ||||||||||||||||| | ||||||||||||||| ||| | ||||| ||| ||||| || |||||||||||||||| |
|
|
| T |
35789656 |
gtagaggcctgccgcaacattgaagaaaaaggcgaggaagtcgtgattctcagtagttctctcttcttggatcagtccttatcgggtccaggatgggggg |
35789557 |
T |
|
| Q |
318 |
acgaagaag-----aagtt-agaaaaccttctgagccaaattatgctggtcagggatgggaatcaaatcaacatgaaaataatgaaacaaactcttggga |
411 |
Q |
| |
|
||||||||| ||||| | ||| |||| ||| |||||| ||| || || |||||||||||| || ||||||| |||||| ||| ||||| |||| | |
|
|
| T |
35789556 |
acgaagaagacgaaaagttaacaaagccttatgaaccaaatgatgttgctcggggatgggaatcgaaccaacatggaaataaccaaaaaaacttttggaa |
35789457 |
T |
|
| Q |
412 |
acaatatcttcctccaattgatgaacatgcaaaagaatatggttggcaaaatagtcacaatgattctcagaggtggattcagagggagcactatggtggt |
511 |
Q |
| |
|
||| ||| | |||| ||||| | ||||||||||||||| ||| ||||| |||| ||||||||||| | |||| |||||||||||| ||||||||| |
|
|
| T |
35789456 |
acagtatgatgctcccattgaacatgctgcaaaagaatatggatggaaaaatggtcagaatgattctcaaggatggaatcagagggagcaatatggtggt |
35789357 |
T |
|
| Q |
512 |
gacttgcataacaagta |
528 |
Q |
| |
|
||||| ||||||||||| |
|
|
| T |
35789356 |
gactttcataacaagta |
35789340 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 155; E-Value: 5e-82
Query Start/End: Original strand, 29 - 528
Target Start/End: Complemental strand, 35799488 - 35798968
Alignment:
| Q |
29 |
catcccaatgtggtaaactgggatgactctgctgtaaaaggggcattcaacaatgcaaaaaacaggttttgggctgagatcaatggccttccctgtgaca |
128 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||| |||| ||||||| |||||||||||||||||| ||||||||||||||| ||| ||||||| |||| |
|
|
| T |
35799488 |
catcccaaagtggtaaactgggacgactctgctgtcaaagaggcattcgacaatgcaaaaaacaggtattgggctgagatcaacggcattccctgggaca |
35799389 |
T |
|
| Q |
129 |
taccattgcctgatcctaacatatacatcgatgatgtagattggaatgcaactatcgaccctgaactatatctggatgtggaaagagaagcagtagcccg |
228 |
Q |
| |
|
|||||||||| |||||||||| ||||| ||||||||||||| ||||||| | |||| ||||||| ||| ||||||||||| |||||||| ||||| |
|
|
| T |
35799388 |
taccattgcccaatcctaacatttacatagatgatgtagattcaaatgcaagtgtcgattctgaacttcatcgggatgtggaaatagaagcagaggcccg |
35799289 |
T |
|
| Q |
229 |
ccgcaacatagaagaaaaaggcgaggaggccgtgattctcagtagctcttttctcttgagtcattccttttcaggtc---------------caggatgg |
313 |
Q |
| |
|
|| ||||||| |||||||||| |||| ||| |||||||| | || ||| | ||||||| ||| |||| ||| |||| | |||||| |
|
|
| T |
35799288 |
ccacaacataaaagaaaaaggagaggcggctgtgattctaggcagttctctcctcttgaatcagtcctcttccggtcttggattgggacctactggatgg |
35799189 |
T |
|
| Q |
314 |
ggggacgaagaag-----aagtt-agaaaaccttctgagccaaattatgctggtcagggatgggaatcaaatcaacatgaaaataatgaaacaaactctt |
407 |
Q |
| |
|
||||||||||||| ||||| | ||| |||||||| ||||||||||||| || |||||| |||||||| ||||||||||||||||||||||||| | |
|
|
| T |
35799188 |
ggggacgaagaagacgaaaagttaacaaagccttctgaaccaaattatgctgctctgggatgcgaatcaaaccaacatgaaaataatgaaacaaacttat |
35799089 |
T |
|
| Q |
408 |
gggaacaatatcttcctccaattgatgaacatgcaaaagaatatggttggcaaaatagtcacaatgattctcagaggtggattcagagggagcactatgg |
507 |
Q |
| |
|
| ||||| |||| | | || |||| | |||||||||| |||| ||||||||| |||| |||||||||||| | |||| ||||||||||| ||||| |
|
|
| T |
35799088 |
gtgaacagtatcatgcgcccgttgaacatgctgcaaaagaacatggatggcaaaatggtcagaatgattctcagggatggaatcagagggagcgatatgg |
35798989 |
T |
|
| Q |
508 |
tggtgacttgcataacaagta |
528 |
Q |
| |
|
||||||||| ||||||||||| |
|
|
| T |
35798988 |
tggtgactttcataacaagta |
35798968 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 18 - 378
Target Start/End: Complemental strand, 35786004 - 35785641
Alignment:
| Q |
18 |
atatgtctctacatcccaatgtggtaaactgggatgactctgctgtaaaaggggcattcaacaatgcaaaaaacaggttttgggctgagatcaatggcct |
117 |
Q |
| |
|
|||||| ||| || ||||| |||||||||||| | ||||||||||| |||| |||||| |||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
35786004 |
atatgtgtcttcaccccaaagtggtaaactggaacgactctgctgtcaaagaggcatttgacaatgcaaaaaacaggttttgggctgagatcaacggcct |
35785905 |
T |
|
| Q |
118 |
tccctgtgacataccattgcctgatcctaacatatacatcgatgatgtagattggaatgcaactatcgaccctgaactatatctggatgtggaaagagaa |
217 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||| ||||||||||||||||||| ||| ||| ||||||| ||| |||| |||||||||||| |
|
|
| T |
35785904 |
tccctgcaacataccattgcctgatcctaacatttacatcgacgatgtagattggaatgcaagtattgactctgaactttatttggaggtggaaagagaa |
35785805 |
T |
|
| Q |
218 |
gcagtagcccgccgcaacatagaagaaaaaggcgaggaggccgtgattctcagtagctcttttctcttgagtcattccttttcaggtccaggatgggggg |
317 |
Q |
| |
|
|||| |||||||||||||| || ||||| |||||| |||||||||| |||| ||| | ||||||| ||| ||||| || ||||| |||||||||| |
|
|
| T |
35785804 |
gcagaggcccgccgcaacatggatcaaaaacccgaggaaatcgtgattctcggtagttctctcctcttgaatcagtccttgtctggtcctggatgggggg |
35785705 |
T |
|
| Q |
318 |
acgaagaagaa---gttagaaaaccttctgagccaaattatgctggtcagggatgggaatcaaa |
378 |
Q |
| |
|
|| |||||||| || | ||| || ||||| ||||| ||||||| ||||||||||||| |||| |
|
|
| T |
35785704 |
acaaagaagaaaacgtaacaaagccctctgaaccaaactatgctgctcagggatgggaaacaaa |
35785641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 395 - 525
Target Start/End: Complemental strand, 35785648 - 35785518
Alignment:
| Q |
395 |
gaaacaaactcttgggaacaatatcttcctccaattgatgaacatgcaaaagaatatggttggcaaaatagtcacaatgattctcagaggtggattcaga |
494 |
Q |
| |
|
|||||||||||||||||||| |||| | |||| ||||||||||||||||||||||||| ||| |||||||||| ||||||||||||||||||||||||| |
|
|
| T |
35785648 |
gaaacaaactcttgggaacagtatcatgctcctgttgatgaacatgcaaaagaatatgggtggaaaaatagtcagaatgattctcagaggtggattcaga |
35785549 |
T |
|
| Q |
495 |
gggagcactatggtggtgacttgcataacaa |
525 |
Q |
| |
|
||||| |||||||||| ||||||||||||| |
|
|
| T |
35785548 |
gggagaactatggtggcaacttgcataacaa |
35785518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 44 - 221
Target Start/End: Complemental strand, 35766523 - 35766346
Alignment:
| Q |
44 |
aactgggatgactctgctgtaaaaggggcattcaacaatgcaaaaaacaggttttgggctgagatcaatggccttccctgtgacataccattgcctgatc |
143 |
Q |
| |
|
|||||||| ||||||||||| |||| ||||||| ||||||| || ||||||||||||||||| ||||| ||| ||||||| ||||||||||||||||||| |
|
|
| T |
35766523 |
aactgggacgactctgctgtcaaagaggcattcgacaatgctaagaacaggttttgggctgatatcaacggctttccctgcgacataccattgcctgatc |
35766424 |
T |
|
| Q |
144 |
ctaacatatacatcgatgatgtagattggaatgcaactatcgaccctgaactatatctggatgtggaaagagaagcag |
221 |
Q |
| |
|
||||||| ||||||| ||||| |||| | |||| | |||||||| |||| ||||| ||||||||||| ||||||| |
|
|
| T |
35766423 |
ctaacattcacatcgacgatgtggattcaaccgcaagtgtcgaccctcaactttatcttgatgtggaaagtgaagcag |
35766346 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 332 - 528
Target Start/End: Complemental strand, 35766211 - 35766015
Alignment:
| Q |
332 |
agaaaaccttctgagccaaattatgctggtcagggatgggaatcaaatcaacatgaaaataatgaaacaaactcttgggaacaatatcttcctccaattg |
431 |
Q |
| |
|
|||||||||||||| |||||||||||| ||| |||||||||| || |||||||||||| ||||||||||||| ||||||| ||| || | ||| |
|
|
| T |
35766211 |
agaaaaccttctgaaccaaattatgcttctcaaggatgggaattgaaccaacatgaaaatgatgaaacaaactcctgggaacgttattgggcttctgttg |
35766112 |
T |
|
| Q |
432 |
atgaacatgcaaaagaatatggttggcaaaatagtcacaatgattctcagaggtggattcagagggagcactatggtggtgacttgcataacaagta |
528 |
Q |
| |
|
|| ||| ||||||||||||||| ||| ||||| | || ||| ||||||| ||| ||||||||||||||| || |||||| |||||||||||||||| |
|
|
| T |
35766111 |
ataaacgtgcaaaagaatatggatggaaaaatgggcagaataattctcaaaggcggattcagagggagcgctttggtggcaacttgcataacaagta |
35766015 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 47 - 144
Target Start/End: Complemental strand, 20615188 - 20615091
Alignment:
| Q |
47 |
tgggatgactctgctgtaaaaggggcattcaacaatgcaaaaaacaggttttgggctgagatcaatggccttccctgtgacataccattgcctgatcc |
144 |
Q |
| |
|
|||||||| ||||||| |||| ||||| |||||||||||| ||||||||||| || |||||||||||||| || ||||||| || |||||||| |
|
|
| T |
20615188 |
tgggatgattctgctgctaaagaagcatttgacaatgcaaaaagtaggttttgggcagatatcaatggccttccttgcaacataccttttcctgatcc |
20615091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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