View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8262_low_1 (Length: 681)
Name: NF8262_low_1
Description: NF8262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8262_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 141 - 628
Target Start/End: Original strand, 32045358 - 32045834
Alignment:
| Q |
141 |
gtgtgaggacccggtgccccaagtcttca-tagcaaacccgagcaaggaaacatctttccaccaacatgaaatggatcgaaagcccatagggcgcccacc |
239 |
Q |
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| T |
32045358 |
gtgtgaggacc-ggtgccccaagtcttccgtagcaaacccgagcaaggaaacatctttccaccaacatgaaatggatcgaaagcctagagggtgcccacc |
32045456 |
T |
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| Q |
240 |
acgatgatcatgaagagatccaccaccgtatcgagctaacataacatctccccataggacctctctactgaaaataatgaggcaccaacgccatttccct |
339 |
Q |
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| T |
32045457 |
acgatgatcaagaagagatccaccaccataacgagctaacataacatctccccataagacctctctactgaaaataatgaggcagcaacgccatttccct |
32045556 |
T |
|
| Q |
340 |
aaaatagttaaagaatctttcgatcatctttagagccccagcccacacaaaaaccgcctctaaagactagcaatcttttttccacttcttacaccccaaa |
439 |
Q |
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| T |
32045557 |
aaaatagttaaagaatctttcgatcatctttagagccccagcccacacaaaaaccgcctctaaagactagcaatcttttttccacttcttacaccccaaa |
32045656 |
T |
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| Q |
440 |
taatctttgtttaattacttaatttaacaaagtaattacacataaaactaacttatcctaacacatttgttgtccccaagtagttgatacacacaatagc |
539 |
Q |
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| T |
32045657 |
taatctttatttaattacttaatttaacaaagtaattacacataaaactaacttatcctaacacatttgttgtcccc-----------acacacaatagc |
32045745 |
T |
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| Q |
540 |
atacaattttcttttatatcttcctgaatttccacagtaataatcaataatttatgatgaggctttagtaaactatcgtccaaaacata |
628 |
Q |
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| T |
32045746 |
atacaattttcttttatatcttcctgaatttccacagtaataatcaataatttatgacgaggttttagtaaactatcgtccaaaacata |
32045834 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 1 - 139
Target Start/End: Original strand, 32045186 - 32045321
Alignment:
| Q |
1 |
tatcaacttttaaacgcacgattaacaacctaacttccaaattgcccaccaaagcctggcgttccgaagaaacatggaaaagtctnnnnnnntatatcct |
100 |
Q |
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|||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||| ||||| |||||||| |
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| T |
32045186 |
tatcaactttcaaatgcacgattaacaacctaacttccaaattgcccaccaaagcctcgcgttccgaagaaacctgg---agtctaaaaaaatatatcct |
32045282 |
T |
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| Q |
101 |
caaaggagcattcccaagcaagaggtcattccagaagga |
139 |
Q |
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| T |
32045283 |
caaaggagcattcccaagcaaggagtcattccagaagga |
32045321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 627 - 665
Target Start/End: Original strand, 32046132 - 32046170
Alignment:
| Q |
627 |
tatataactgctctaagaatctctttctcccgagattct |
665 |
Q |
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| T |
32046132 |
tatataactactctaagaatctctttctcccgagattct |
32046170 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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