View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8262_low_11 (Length: 221)

Name: NF8262_low_11
Description: NF8262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8262_low_11
NF8262_low_11
[»] chr4 (1 HSPs)
chr4 (24-184)||(47708209-47708370)
[»] chr6 (1 HSPs)
chr6 (3-185)||(32185150-32185332)
[»] chr1 (2 HSPs)
chr1 (13-185)||(15283302-15283473)
chr1 (148-185)||(41614707-41614744)
[»] chr5 (5 HSPs)
chr5 (59-184)||(40168143-40168268)
chr5 (3-183)||(42258746-42258927)
chr5 (148-184)||(379381-379417)
chr5 (155-185)||(27679840-27679870)
chr5 (148-184)||(35100975-35101011)
[»] chr3 (1 HSPs)
chr3 (148-185)||(35216537-35216574)


Alignment Details
Target: chr4 (Bit Score: 114; Significance: 6e-58; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 24 - 184
Target Start/End: Complemental strand, 47708370 - 47708209
Alignment:
Q  24 agagatggtggttagaccccttgacttgtttggggatcgactaacctatttttattgtatataacttatgtgacaaattgttatttggggtggtctgttc 123  Q
    |||||||||||| ||||||||||| |||||||||||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  47708370 agagatggtggtcagaccccttgatttgtttggggatcgacgaacctgtttttattgtatataacttatgtgacagattgttatttggggtggtctgttc 47708271  T
Q  124 gatacacc-ttgtactcagaagcactcaccaccggtgttaatatattccatttttatgtctt 184  Q
    | |||||| ||||||| || |||||||||| || ||||||||||||||||||||||||||||    
T  47708270 ggtacacctttgtactgaggagcactcaccgccagtgttaatatattccatttttatgtctt 47708209  T

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Target: chr6 (Bit Score: 111; Significance: 3e-56; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 3e-56
Query Start/End: Original strand, 3 - 185
Target Start/End: Complemental strand, 32185332 - 32185150
Alignment:
Q  3 ccaagtttatttatggtgtgaagagatggtggttagaccccttgacttgtttggggatcgactaacctatttttattgtatataacttatgtgacaaatt 102  Q
    |||||||| ||||||||||| | ||||||||||  |||||||||||||||||| | |||||||||||| ||||| ||||||||||||| | ||||| |||    
T  32185332 ccaagtttgtttatggtgtgcaaagatggtggtcggaccccttgacttgtttgagtatcgactaacctgtttttcttgtatataacttgtatgacatatt 32185233  T
Q  103 gttatttggggtggtctgttcgatacaccttgtactcagaagcactcaccaccggtgttaatatattccatttttatgtcttc 185  Q
    |||||||||||| ||||||||| ||||||||||||| || |||||||||| || |||||||||||||||||||||||||||||    
T  32185232 gttatttggggtagtctgttcggtacaccttgtactgaggagcactcaccgccagtgttaatatattccatttttatgtcttc 32185150  T

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Target: chr1 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 13 - 185
Target Start/End: Original strand, 15283302 - 15283473
Alignment:
Q  13 ttatggtgtgaagagatggtggttagaccccttgacttgtttggggatcgactaacctatttttattgtatataacttatgtgacaaattgttatttggg 112  Q
    ||||||| || ||||||||||||  |||||||||||||||||||  ||||||| |||| | ||| |||||||||  || | ||||| ||||||  ||| |    
T  15283302 ttatggtttgcagagatggtggtcggaccccttgacttgtttggatatcgactgacctgtctttcttgtatatattttgtatgacagattgtttattgag 15283401  T
Q  113 gtggtctgttcgatacaccttgtactcagaagcactcaccaccggtgttaatatattccatttttatgtcttc 185  Q
    ||||||| |||| |||||||| || | || ||||| ||||||| ||||||||||||  || ||||||||||||    
T  15283402 gtggtctcttcggtacaccttatattgaggagcacacaccaccagtgttaatatatctca-ttttatgtcttc 15283473  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 41614707 - 41614744
Alignment:
Q  148 tcaccaccggtgttaatatattccatttttatgtcttc 185  Q
    ||||||||| ||||||||||||| ||||||||||||||    
T  41614707 tcaccaccgatgttaatatattctatttttatgtcttc 41614744  T

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Target: chr5 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 59 - 184
Target Start/End: Original strand, 40168143 - 40168268
Alignment:
Q  59 atcgactaacctatttttattgtatataacttatgtgacaaattgttatttggggtggtctgttcgatacaccttgtactcagaagcactcaccaccggt 158  Q
    ||||||| |||| ||| | | |||||||  |||| |||||  ||||| ||||| ||||||| || | |||| |||||||| |||||||| || | |||||    
T  40168143 atcgactgacctgtttctctcgtatatactttatatgacactttgttttttggagtggtctttttggtacatcttgtactgagaagcacacatcgccggt 40168242  T
Q  159 gttaatatattccatttttatgtctt 184  Q
    |||||||||| |||||||||||||||    
T  40168243 gttaatatatcccatttttatgtctt 40168268  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 3 - 183
Target Start/End: Complemental strand, 42258927 - 42258746
Alignment:
Q  3 ccaagtttatttatggtgtgaagagatggtggttagaccccttgacttgtttgggg-atcgactaacctatttttattgtatataacttatgtgacaaat 101  Q
    |||||||| |||||||| || |||| |||| ||  || || |||  |||||||||| |||||||||| | | ||| |||||||||  || | ||||   |    
T  42258927 ccaagtttgtttatggtttgcagagttggtagtcggatcctttgttttgtttggggtatcgactaacatgtatttcttgtatatactttgtatgactcct 42258828  T
Q  102 tgttatttggggtggtctgttcgatacaccttgtactcagaagcactcaccaccggtgttaatatattccatttttatgtct 183  Q
    ||||  ||| |||||||| || | |||| |||||||| |||||||| || | |||||||||||||||| |||||||||||||    
T  42258827 tgtttcttgaggtggtctttttgctacatcttgtactgagaagcacacatcgccggtgttaatatatttcatttttatgtct 42258746  T

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Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 379417 - 379381
Alignment:
Q  148 tcaccaccggtgttaatatattccatttttatgtctt 184  Q
    ||||||||| |||||||||||||||||||||||||||    
T  379417 tcaccaccgatgttaatatattccatttttatgtctt 379381  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 155 - 185
Target Start/End: Original strand, 27679840 - 27679870
Alignment:
Q  155 cggtgttaatatattccatttttatgtcttc 185  Q
    |||||||||||||||||||||||||||||||    
T  27679840 cggtgttaatatattccatttttatgtcttc 27679870  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 148 - 184
Target Start/End: Complemental strand, 35101011 - 35100975
Alignment:
Q  148 tcaccaccggtgttaatatattccatttttatgtctt 184  Q
    ||||| ||| |||||||||||||||||||||||||||    
T  35101011 tcaccgccgttgttaatatattccatttttatgtctt 35100975  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 148 - 185
Target Start/End: Original strand, 35216537 - 35216574
Alignment:
Q  148 tcaccaccggtgttaatatattccatttttatgtcttc 185  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  35216537 tcaccaccaatgttaatatattccatttttatgtcttc 35216574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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