View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8262_low_2 (Length: 424)
Name: NF8262_low_2
Description: NF8262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8262_low_2 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 124; Significance: 1e-63; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 15 - 211
Target Start/End: Original strand, 31935569 - 31935777
Alignment:
| Q |
15 |
atgaatagaagatctaaccatatataccaatcacaattgataaatatcactctttttgcttgcat------------gacaatatttggtaaataataat |
102 |
Q |
| |
|
|||| |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||| | |
|
|
| T |
31935569 |
atgagtagaaggtttaaccatatataccaatcacaattgataaatatcactctttttgcttgcattcaatgttgaaggaaaatatttggtaaataatatt |
31935668 |
T |
|
| Q |
103 |
ttccacatctataagagttgagtatattannnnnnnnaaaaagttacagtgtagatttacgtgacaatatgattattttatcaagcatctcaactgaact |
202 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31935669 |
ttccacatctataagagttgagtatattatttttttaaaaaagttacagtgtagatttacgtgacaatatgattattttatcaagcatctcaactgaact |
31935768 |
T |
|
| Q |
203 |
catttttaa |
211 |
Q |
| |
|
||||||||| |
|
|
| T |
31935769 |
catttttaa |
31935777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 314 - 406
Target Start/End: Original strand, 31935918 - 31936010
Alignment:
| Q |
314 |
gatactatactatattgtatcaacgaatcactctttttctcaatgcatgccatatgaagaaacatcttgattcttattgagaacctgccatgt |
406 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
31935918 |
gatacgatactatattgtatcaacgaatcactctttttctcaatgcatgccatatgaagaaacatcttgattcttattgagaacttgccatgt |
31936010 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 314 - 361
Target Start/End: Original strand, 31932837 - 31932884
Alignment:
| Q |
314 |
gatactatactatattgtatcaacgaatcactctttttctcaatgcat |
361 |
Q |
| |
|
||||||||||||||||||||||| |||||||||| ||||||||||||| |
|
|
| T |
31932837 |
gatactatactatattgtatcaatgaatcactctctttctcaatgcat |
31932884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University