View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8262_low_4 (Length: 345)

Name: NF8262_low_4
Description: NF8262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8262_low_4
NF8262_low_4
[»] chr2 (15 HSPs)
chr2 (16-328)||(9167607-9167919)
chr2 (29-187)||(9156102-9156260)
chr2 (252-315)||(40681982-40682045)
chr2 (253-311)||(18570973-18571031)
chr2 (253-303)||(28121557-28121607)
chr2 (256-304)||(44605146-44605194)
chr2 (252-315)||(18029562-18029624)
chr2 (259-310)||(28369806-28369857)
chr2 (252-294)||(10535776-10535818)
chr2 (252-294)||(26787815-26787857)
chr2 (259-293)||(30563416-30563450)
chr2 (252-309)||(4229410-4229467)
chr2 (252-281)||(12464879-12464908)
chr2 (253-305)||(16630796-16630848)
chr2 (259-303)||(19613621-19613665)
[»] chr4 (16 HSPs)
chr4 (251-314)||(18513238-18513301)
chr4 (252-302)||(40224540-40224590)
chr4 (252-309)||(19262926-19262983)
chr4 (252-304)||(14465301-14465353)
chr4 (259-294)||(5654608-5654643)
chr4 (259-294)||(10546155-10546190)
chr4 (252-315)||(54621812-54621875)
chr4 (252-294)||(34589723-34589765)
chr4 (262-315)||(5225609-5225662)
chr4 (253-294)||(21345550-21345591)
chr4 (252-305)||(22596986-22597039)
chr4 (253-294)||(26276026-26276067)
chr4 (250-278)||(7367551-7367579)
chr4 (261-309)||(11110212-11110260)
chr4 (252-304)||(23915129-23915181)
chr4 (255-303)||(36386219-36386267)
[»] chr3 (8 HSPs)
chr3 (250-313)||(9210823-9210886)
chr3 (254-296)||(40017384-40017426)
chr3 (252-294)||(41319327-41319369)
chr3 (252-303)||(21478683-21478734)
chr3 (252-294)||(46191362-46191404)
chr3 (259-304)||(20691326-20691371)
chr3 (259-304)||(40150578-40150623)
chr3 (252-304)||(13799504-13799556)
[»] chr6 (9 HSPs)
chr6 (252-314)||(9024173-9024235)
chr6 (252-294)||(4859130-4859172)
chr6 (259-293)||(2140499-2140533)
chr6 (263-304)||(10157995-10158036)
chr6 (258-295)||(33076414-33076451)
chr6 (254-290)||(1893390-1893426)
chr6 (260-304)||(9617442-9617486)
chr6 (258-294)||(29049891-29049927)
chr6 (260-304)||(30866151-30866195)
[»] chr5 (14 HSPs)
chr5 (264-314)||(41558651-41558701)
chr5 (252-310)||(39424641-39424699)
chr5 (252-293)||(9449469-9449510)
chr5 (247-292)||(28296323-28296368)
chr5 (259-294)||(11596472-11596507)
chr5 (252-311)||(32630735-32630794)
chr5 (252-303)||(38749571-38749622)
chr5 (258-304)||(17925179-17925225)
chr5 (252-310)||(23287350-23287408)
chr5 (250-283)||(36908737-36908770)
chr5 (250-283)||(36908786-36908819)
chr5 (252-293)||(38806866-38806907)
chr5 (252-293)||(41558701-41558742)
chr5 (253-294)||(43208291-43208332)
[»] chr7 (10 HSPs)
chr7 (252-304)||(38134413-38134465)
chr7 (252-311)||(4909151-4909210)
chr7 (259-303)||(44172898-44172942)
chr7 (255-294)||(1415573-1415612)
chr7 (261-314)||(19930938-19930991)
chr7 (250-303)||(30013193-30013246)
chr7 (254-303)||(31808517-31808566)
chr7 (252-305)||(37775982-37776035)
chr7 (252-304)||(2525851-2525903)
chr7 (259-303)||(36314635-36314679)
[»] chr8 (14 HSPs)
chr8 (260-310)||(29198480-29198530)
chr8 (252-294)||(34201063-34201105)
chr8 (252-294)||(40063951-40063993)
chr8 (253-294)||(37225760-37225801)
chr8 (253-293)||(14227223-14227263)
chr8 (258-309)||(1639496-1639547)
chr8 (251-294)||(12985391-12985434)
chr8 (255-294)||(14740733-14740772)
chr8 (260-314)||(24362199-24362253)
chr8 (252-296)||(1433345-1433389)
chr8 (259-303)||(3508059-3508103)
chr8 (262-294)||(10441213-10441245)
chr8 (260-304)||(31236584-31236628)
chr8 (252-304)||(31548300-31548352)
[»] chr1 (17 HSPs)
chr1 (253-310)||(2445871-2445928)
chr1 (257-294)||(3921672-3921709)
chr1 (258-294)||(21641706-21641742)
chr1 (259-294)||(11571592-11571627)
chr1 (259-294)||(40747790-40747825)
chr1 (260-314)||(7918208-7918262)
chr1 (252-294)||(17080898-17080940)
chr1 (252-314)||(25361886-25361948)
chr1 (252-294)||(33202903-33202945)
chr1 (253-303)||(42325561-42325611)
chr1 (252-294)||(43942324-43942366)
chr1 (260-305)||(30847726-30847771)
chr1 (252-304)||(10572596-10572648)
chr1 (253-309)||(10799671-10799727)
chr1 (252-304)||(19637768-19637820)
chr1 (260-304)||(29230073-29230117)
chr1 (259-315)||(43328474-43328530)
[»] scaffold0320 (1 HSPs)
scaffold0320 (260-303)||(17044-17087)


Alignment Details
Target: chr2 (Bit Score: 285; Significance: 1e-160; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 16 - 328
Target Start/End: Complemental strand, 9167919 - 9167607
Alignment:
Q  16 aagaaatactttcttgggaggtttatgaatgggttgcctgatttttcaaagaagaaaagtgctaaaaataagtggtctttgaagaaggatggattgaagg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9167919 aagaaatactttcttgggaggtttatgaatgggttgcctgatttttcaaagaagaaaagtgctaaaaataagtggtctttgaagaaggatggattgaagg 9167820  T
Q  116 gtcgtcaagttactgattccacaagggtattgaattttgttcttggattattgctttgtctttgtggctttcctgaattatatttagaagaacctattat 215  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  9167819 gtcgtcaagttactgattccacaagggtattgaattttgatcttggattattgctttgtctttgtggctttcctgaactatatttagaagaacctattat 9167720  T
Q  216 tatgaaagcataaacatggacgcgaagggataagtagacaccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgtcaatgtcgtgtt 315  Q
    |||||||||||||||||||||||||||||| ||||||||||||||| |||| |||||||| ||||||| |||||||||||||||||||||||||||||||    
T  9167719 tatgaaagcataaacatggacgcgaagggacaagtagacaccaatactaatctgagaaaaggacataattcaatgtaataaaatgtgtcaatgtcgtgtt 9167620  T
Q  316 taggggtgttcat 328  Q
    |||||||||||||    
T  9167619 taggggtgttcat 9167607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 29 - 187
Target Start/End: Complemental strand, 9156260 - 9156102
Alignment:
Q  29 ttgggaggtttatgaatgggttgcctgatttttcaaagaagaaaagtgctaaaaataagtggtctttgaagaaggatggattgaagggtcgtcaagttac 128  Q
    |||| |||||||||| |||||||||||||||||||||||||||||||||| | ||||| ||||||||| |||| ||||||||||||||||||||||||||    
T  9156260 ttggaaggtttatgactgggttgcctgatttttcaaagaagaaaagtgctgagaataaatggtctttgcagaaagatggattgaagggtcgtcaagttac 9156161  T
Q  129 tgattccacaagggtattgaattttgttcttggattattgctttgtctttgtggctttc 187  Q
    |||| | |||||||||||  | |||||| |||||||||||||||||||| |||| ||||    
T  9156160 tgatgctacaagggtattctaatttgtttttggattattgctttgtcttcgtggttttc 9156102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 252 - 315
Target Start/End: Original strand, 40681982 - 40682045
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgtcaatgtcgtgtt 315  Q
    |||||| ||||||||||||||||||||||||| ||||||||||   | ||||||||||||||||    
T  40681982 gacaccgataataatttgagaaaatgacataattcaatgtaattgcacgtgtcaatgtcgtgtt 40682045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 253 - 311
Target Start/End: Original strand, 18570973 - 18571031
Alignment:
Q  253 acaccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgtcaatgtcg 311  Q
    ||||| ||||||||||||||||||||||||| |||||||||| | |||||||| |||||    
T  18570973 acaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtcg 18571031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 253 - 303
Target Start/End: Complemental strand, 28121607 - 28121557
Alignment:
Q  253 acaccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgt 303  Q
    |||||| |||||||||||||||||| |||||||||||||||| | ||||||    
T  28121607 acaccattaataatttgagaaaatggcataaatcaatgtaattatatgtgt 28121557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 304
Target Start/End: Complemental strand, 44605194 - 44605146
Alignment:
Q  256 ccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgtc 304  Q
    ||||||||||||||||||||| |||||| |||||||||| | |||||||    
T  44605194 ccaataataatttgagaaaataacataattcaatgtaattacatgtgtc 44605146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 315
Target Start/End: Complemental strand, 18029624 - 18029562
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgtcaatgtcgtgtt 315  Q
    |||||||||||||||||||||||||||| ||| ||| ||||||  ||||||||| |||| ||||    
T  18029624 gacaccaataataatttgagaaaatgacttaactcactgtaat-caatgtgtcagtgtcatgtt 18029562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 310
Target Start/End: Complemental strand, 28369857 - 28369806
Alignment:
Q  259 ataataatttgagaaaatgacataaatcaatgtaataaaatgtgtcaatgtc 310  Q
    ||||||||||||||||||||  ||||| |||||||||| |||||||| ||||    
T  28369857 ataataatttgagaaaatgaattaaataaatgtaataacatgtgtcagtgtc 28369806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 294
Target Start/End: Complemental strand, 10535818 - 10535776
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaat 294  Q
    |||||| ||||||||||||||||||||||||| ||| ||||||    
T  10535818 gacaccgataataatttgagaaaatgacataattcagtgtaat 10535776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 294
Target Start/End: Complemental strand, 26787857 - 26787815
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaat 294  Q
    ||||||||||| |||||||||||||||||||| || |||||||    
T  26787857 gacaccaataaaaatttgagaaaatgacataattcgatgtaat 26787815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 293
Target Start/End: Original strand, 30563416 - 30563450
Alignment:
Q  259 ataataatttgagaaaatgacataaatcaatgtaa 293  Q
    ||||||||||||||||||||||||| |||||||||    
T  30563416 ataataatttgagaaaatgacataattcaatgtaa 30563450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 309
Target Start/End: Complemental strand, 4229467 - 4229410
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgtcaatgt 309  Q
    ||||||||||||||||| ||| |||||||||| ||| |||||| | ||||||| ||||    
T  4229467 gacaccaataataatttaagagaatgacataattcagtgtaatcatatgtgtcgatgt 4229410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 281
Target Start/End: Complemental strand, 12464908 - 12464879
Alignment:
Q  252 gacaccaataataatttgagaaaatgacat 281  Q
    ||||||||||||||||||||||||||||||    
T  12464908 gacaccaataataatttgagaaaatgacat 12464879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 305
Target Start/End: Original strand, 16630796 - 16630848
Alignment:
Q  253 acaccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgtca 305  Q
    ||||| |||||||||| |||||||||||||| ||||| |||| | ||||||||    
T  16630796 acaccgataataatttaagaaaatgacataattcaatttaatcacatgtgtca 16630848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 19613665 - 19613621
Alignment:
Q  259 ataataatttgagaaaatgacataaatcaatgtaataaaatgtgt 303  Q
    |||||||||||||||||| |||||| |||||||||| | ||||||    
T  19613665 ataataatttgagaaaataacataattcaatgtaatgatatgtgt 19613621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 314
Target Start/End: Complemental strand, 18513301 - 18513238
Alignment:
Q  251 agacaccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgtcaatgtcgtgt 314  Q
    ||||||| ||||||||||||||||||||||||| |||||||||| | |||||||| ||| ||||    
T  18513301 agacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgttgtgt 18513238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 302
Target Start/End: Complemental strand, 40224590 - 40224540
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaataaaatgtg 302  Q
    |||||| |||||||||||||||||||| |||| |||||||||||| |||||    
T  40224590 gacacccataataatttgagaaaatgatataagtcaatgtaataatatgtg 40224540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 309
Target Start/End: Complemental strand, 19262983 - 19262926
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgtcaatgt 309  Q
    ||||||| |||||||||||||| ||||||||| | |||||||| | ||||||||||||    
T  19262983 gacaccagtaataatttgagaagatgacataattgaatgtaatcacatgtgtcaatgt 19262926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 14465353 - 14465301
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgtc 304  Q
    |||||| ||||||||||||||||||||||||| ||||| |||| | |||||||    
T  14465353 gacaccgataataatttgagaaaatgacataattcaatttaatcatatgtgtc 14465301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 294
Target Start/End: Complemental strand, 5654643 - 5654608
Alignment:
Q  259 ataataatttgagaaaatgacataaatcaatgtaat 294  Q
    ||||||||||||||||||||||||| ||||||||||    
T  5654643 ataataatttgagaaaatgacataattcaatgtaat 5654608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 294
Target Start/End: Original strand, 10546155 - 10546190
Alignment:
Q  259 ataataatttgagaaaatgacataaatcaatgtaat 294  Q
    ||||||||||||||||||||||||| ||||||||||    
T  10546155 ataataatttgagaaaatgacataattcaatgtaat 10546190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 315
Target Start/End: Original strand, 54621812 - 54621875
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgtcaatgtcgtgtt 315  Q
    ||||||||||||| |||||||||||||||||| |||| ||||| | ||||| ||  ||||||||    
T  54621812 gacaccaataatagtttgagaaaatgacataactcaaggtaatgatatgtgccagagtcgtgtt 54621875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 294
Target Start/End: Complemental strand, 34589765 - 34589723
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaat 294  Q
    |||||| |||| |||||||||||||||||||| ||||||||||    
T  34589765 gacaccgataacaatttgagaaaatgacataattcaatgtaat 34589723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 262 - 315
Target Start/End: Complemental strand, 5225662 - 5225609
Alignment:
Q  262 ataatttgagaaaatgacataaatcaatgtaataaaatgtgtcaatgtcgtgtt 315  Q
    ||||||||||| |||||||||| |||||| ||||| |||||||  |||||||||    
T  5225662 ataatttgagataatgacataattcaatgcaataatatgtgtcggtgtcgtgtt 5225609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 294
Target Start/End: Complemental strand, 21345591 - 21345550
Alignment:
Q  253 acaccaataataatttgagaaaatgacataaatcaatgtaat 294  Q
    |||||||||||||||||| ||||| |||||| ||||||||||    
T  21345591 acaccaataataatttgaaaaaataacataactcaatgtaat 21345550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 305
Target Start/End: Complemental strand, 22597039 - 22596986
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgtca 305  Q
    |||||||||||||||||||||||||  ||||| |||| ||||| | ||||||||    
T  22597039 gacaccaataataatttgagaaaattgcataattcaacgtaatcacatgtgtca 22596986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 294
Target Start/End: Complemental strand, 26276067 - 26276026
Alignment:
Q  253 acaccaataataatttgagaaaatgacataaatcaatgtaat 294  Q
    ||||| || |||||||||||||||||||||| ||||||||||    
T  26276067 acacctatgataatttgagaaaatgacataattcaatgtaat 26276026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 250 - 278
Target Start/End: Original strand, 7367551 - 7367579
Alignment:
Q  250 tagacaccaataataatttgagaaaatga 278  Q
    |||||||||||||||||||||||||||||    
T  7367551 tagacaccaataataatttgagaaaatga 7367579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 261 - 309
Target Start/End: Original strand, 11110212 - 11110260
Alignment:
Q  261 aataatttgagaaaatgacataaatcaatgtaataaaatgtgtcaatgt 309  Q
    ||||||||||||||||||||||| || ||||||| | ||||||| ||||    
T  11110212 aataatttgagaaaatgacataattcgatgtaatcatatgtgtcgatgt 11110260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 23915129 - 23915181
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgtc 304  Q
    |||||||||||| |||||||||||| |||||| ||||| |||| | |||||||    
T  23915129 gacaccaataatcatttgagaaaataacataattcaatataattacatgtgtc 23915181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 255 - 303
Target Start/End: Complemental strand, 36386267 - 36386219
Alignment:
Q  255 accaataataatttgagaaaatgacataaatcaatgtaataaaatgtgt 303  Q
    ||||||||||||||||||||| ||||||| ||| |||||| ||| ||||    
T  36386267 accaataataatttgagaaaaggacataattcagtgtaattaaaggtgt 36386219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 250 - 313
Target Start/End: Complemental strand, 9210886 - 9210823
Alignment:
Q  250 tagacaccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgtcaatgtcgtg 313  Q
    |||||| | ||||||||||||||||||||||||| |||||| ||| | ||||||||||||||||    
T  9210886 tagacaacgataataatttgagaaaatgacataattcaatggaatcacatgtgtcaatgtcgtg 9210823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 254 - 296
Target Start/End: Complemental strand, 40017426 - 40017384
Alignment:
Q  254 caccaataataatttgagaaaatgacataaatcaatgtaataa 296  Q
    ||||||||| |||||||||||||||||||| ||||||||||||    
T  40017426 caccaataacaatttgagaaaatgacataattcaatgtaataa 40017384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 294
Target Start/End: Complemental strand, 41319369 - 41319327
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaat 294  Q
    ||||||||||||||||||| |||||||||||| ||||||||||    
T  41319369 gacaccaataataatttgaaaaaatgacataattcaatgtaat 41319327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 303
Target Start/End: Original strand, 21478683 - 21478734
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgt 303  Q
    ||||||||||||||||| | || |||||||||||||||||||| | ||||||    
T  21478683 gacaccaataataatttcacaagatgacataaatcaatgtaatcatatgtgt 21478734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 294
Target Start/End: Complemental strand, 46191404 - 46191362
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaat 294  Q
    ||||||||||||||||||||||||| |||||| | ||||||||    
T  46191404 gacaccaataataatttgagaaaatcacataattaaatgtaat 46191362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 304
Target Start/End: Original strand, 20691326 - 20691371
Alignment:
Q  259 ataataatttgagaaaatgacataaatcaatgtaataaaatgtgtc 304  Q
    ||||||||||||||||||||||||| ||| |||||| | |||||||    
T  20691326 ataataatttgagaaaatgacataattcagtgtaatcatatgtgtc 20691371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 259 - 304
Target Start/End: Complemental strand, 40150623 - 40150578
Alignment:
Q  259 ataataatttgagaaaatgacataaatcaatgtaataaaatgtgtc 304  Q
    |||||||||||||||||||| |||| |||||||||| | |||||||    
T  40150623 ataataatttgagaaaatgatataattcaatgtaatcatatgtgtc 40150578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 13799504 - 13799556
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgtc 304  Q
    |||||| |||||| |||||||||||||||||| | | |||||||| |||||||    
T  13799504 gacaccgataatagtttgagaaaatgacataattaagtgtaataatatgtgtc 13799556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 252 - 314
Target Start/End: Complemental strand, 9024235 - 9024173
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgtcaatgtcgtgt 314  Q
    ||||| ||| |||||||||||||||||||||| |||||||||| | |||||||| ||||||||    
T  9024235 gacacaaatgataatttgagaaaatgacataattcaatgtaatcatatgtgtcagtgtcgtgt 9024173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 294
Target Start/End: Complemental strand, 4859172 - 4859130
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaat 294  Q
    ||||||||||||||||||||||||||||||||  |||||||||    
T  4859172 gacaccaataataatttgagaaaatgacataatccaatgtaat 4859130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 259 - 293
Target Start/End: Complemental strand, 2140533 - 2140499
Alignment:
Q  259 ataataatttgagaaaatgacataaatcaatgtaa 293  Q
    ||||||||||||||||||||||||| |||||||||    
T  2140533 ataataatttgagaaaatgacataattcaatgtaa 2140499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 263 - 304
Target Start/End: Original strand, 10157995 - 10158036
Alignment:
Q  263 taatttgagaaaatgacataaatcaatgtaataaaatgtgtc 304  Q
    ||||||||||||||||||||| |||||||||| | |||||||    
T  10157995 taatttgagaaaatgacataattcaatgtaatcacatgtgtc 10158036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 295
Target Start/End: Original strand, 33076414 - 33076451
Alignment:
Q  258 aataataatttgagaaaatgacataaatcaatgtaata 295  Q
    |||||||||||||||||||||||||| | |||||||||    
T  33076414 aataataatttgagaaaatgacataattgaatgtaata 33076451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 254 - 290
Target Start/End: Complemental strand, 1893426 - 1893390
Alignment:
Q  254 caccaataataatttgagaaaatgacataaatcaatg 290  Q
    ||||||||||||||||||||||||| |||| ||||||    
T  1893426 caccaataataatttgagaaaatgatataattcaatg 1893390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 9617442 - 9617486
Alignment:
Q  260 taataatttgagaaaatgacataaatcaatgtaataaaatgtgtc 304  Q
    ||||||||||||||||| |||||| |||||||||| | |||||||    
T  9617442 taataatttgagaaaatcacataattcaatgtaattatatgtgtc 9617486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 258 - 294
Target Start/End: Original strand, 29049891 - 29049927
Alignment:
Q  258 aataataatttgagaaaatgacataaatcaatgtaat 294  Q
    ||||||||||||||||||| |||||| ||||||||||    
T  29049891 aataataatttgagaaaattacataattcaatgtaat 29049927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 30866195 - 30866151
Alignment:
Q  260 taataatttgagaaaatgacataaatcaatgtaataaaatgtgtc 304  Q
    ||||||||||||||||| |||||| |||||||||| | |||||||    
T  30866195 taataatttgagaaaatcacataattcaatgtaattatatgtgtc 30866151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 264 - 314
Target Start/End: Complemental strand, 41558701 - 41558651
Alignment:
Q  264 aatttgagaaaatgacataaatcaatgtaataaaatgtgtcaatgtcgtgt 314  Q
    |||||||||||||||||||| |||||||||| |||||||||| ||||||||    
T  41558701 aatttgagaaaatgacataattcaatgtaattaaatgtgtcagtgtcgtgt 41558651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 310
Target Start/End: Original strand, 39424641 - 39424699
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgtcaatgtc 310  Q
    |||||||||||||||||||||||||||||| | |||||||| | | || ||||||||||    
T  39424641 gacaccaataataatttgagaaaatgacatgattcaatgtattcacatctgtcaatgtc 39424699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 252 - 293
Target Start/End: Original strand, 9449469 - 9449510
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaa 293  Q
    ||||||||||||||||||||||||| |||||| |||||||||    
T  9449469 gacaccaataataatttgagaaaatcacataattcaatgtaa 9449510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 247 - 292
Target Start/End: Original strand, 28296323 - 28296368
Alignment:
Q  247 aagtagacaccaataataatttgagaaaatgacataaatcaatgta 292  Q
    |||| |||||| ||||||||||||||||||||||||| ||||||||    
T  28296323 aagtcgacaccgataataatttgagaaaatgacataattcaatgta 28296368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 294
Target Start/End: Complemental strand, 11596507 - 11596472
Alignment:
Q  259 ataataatttgagaaaatgacataaatcaatgtaat 294  Q
    ||||||||||||||||||||||||| ||||||||||    
T  11596507 ataataatttgagaaaatgacataattcaatgtaat 11596472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 311
Target Start/End: Complemental strand, 32630794 - 32630735
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgtcaatgtcg 311  Q
    |||||| |||||||||||||||||| | |||| |||||||||| | |||||||| |||||    
T  32630794 gacaccgataataatttgagaaaattatataattcaatgtaattatatgtgtcagtgtcg 32630735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 252 - 303
Target Start/End: Complemental strand, 38749622 - 38749571
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgt 303  Q
    |||||| |||||||||||| |||||||||||| |||||||||| | ||||||    
T  38749622 gacaccgataataatttgaaaaaatgacataattcaatgtaattatatgtgt 38749571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 258 - 304
Target Start/End: Complemental strand, 17925225 - 17925179
Alignment:
Q  258 aataataatttgagaaaatgacataaatcaatgtaataaaatgtgtc 304  Q
    ||||||||||| ||||||| |||||| |||||||||||| |||||||    
T  17925225 aataataatttaagaaaatcacataattcaatgtaataatatgtgtc 17925179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 310
Target Start/End: Complemental strand, 23287408 - 23287350
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgtcaatgtc 310  Q
    |||||||||||||||||  ||||||||||||| ||||| |||| | |||||||| ||||    
T  23287408 gacaccaataataatttaggaaaatgacataattcaatataattatatgtgtcagtgtc 23287350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 283
Target Start/End: Complemental strand, 36908770 - 36908737
Alignment:
Q  250 tagacaccaataataatttgagaaaatgacataa 283  Q
    |||||||||||||||||||||| |||||||||||    
T  36908770 tagacaccaataataatttgagcaaatgacataa 36908737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 283
Target Start/End: Complemental strand, 36908819 - 36908786
Alignment:
Q  250 tagacaccaataataatttgagaaaatgacataa 283  Q
    |||||||||||||||||||||| |||||||||||    
T  36908819 tagacaccaataataatttgagcaaatgacataa 36908786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 293
Target Start/End: Complemental strand, 38806907 - 38806866
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaa 293  Q
    |||||||||||||||||||||| ||||||| | |||||||||    
T  38806907 gacaccaataataatttgagaatatgacatgattcaatgtaa 38806866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 293
Target Start/End: Complemental strand, 41558742 - 41558701
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaa 293  Q
    ||||| |||||||||||||||||||||||||| |||| ||||    
T  41558742 gacacaaataataatttgagaaaatgacataattcaaagtaa 41558701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 253 - 294
Target Start/End: Complemental strand, 43208332 - 43208291
Alignment:
Q  253 acaccaataataatttgagaaaatgacataaatcaatgtaat 294  Q
    ||||| ||| ||||||||||||||||||||| ||||||||||    
T  43208332 acaccgatagtaatttgagaaaatgacataattcaatgtaat 43208291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000008; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 38134465 - 38134413
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgtc 304  Q
    |||||| ||||||||||||||||||||||||| |||||||||| | |||||||    
T  38134465 gacaccgataataatttgagaaaatgacataattcaatgtaatcatatgtgtc 38134413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 252 - 311
Target Start/End: Original strand, 4909151 - 4909210
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgtcaatgtcg 311  Q
    ||||||||||||||||||||||||| |||||| ||| |||||| | |||||||| |||||    
T  4909151 gacaccaataataatttgagaaaattacataattcattgtaatcatatgtgtcagtgtcg 4909210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 44172942 - 44172898
Alignment:
Q  259 ataataatttgagaaaatgacataaatcaatgtaataaaatgtgt 303  Q
    ||||||||||||||||||||||||| |||||||||| | ||||||    
T  44172942 ataataatttgagaaaatgacataattcaatgtaatcacatgtgt 44172898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 294
Target Start/End: Original strand, 1415573 - 1415612
Alignment:
Q  255 accaataataatttgagaaaatgacataaatcaatgtaat 294  Q
    |||||||||||||||| ||||||||| |||||||||||||    
T  1415573 accaataataatttgaaaaaatgacacaaatcaatgtaat 1415612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 314
Target Start/End: Complemental strand, 19930991 - 19930938
Alignment:
Q  261 aataatttgagaaaatgacataaatcaatgtaataaaatgtgtcaatgtcgtgt 314  Q
    |||||||||| |||||||||||| |||||||||| | ||||||| || ||||||    
T  19930991 aataatttgataaaatgacataattcaatgtaattatatgtgtcgatatcgtgt 19930938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 303
Target Start/End: Original strand, 30013193 - 30013246
Alignment:
Q  250 tagacaccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgt 303  Q
    ||||||||||||||||| |||||||||||| ||| ||||| |||| | ||||||    
T  30013193 tagacaccaataataatatgagaaaatgacgtaattcaatataatcacatgtgt 30013246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 254 - 303
Target Start/End: Complemental strand, 31808566 - 31808517
Alignment:
Q  254 caccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgt 303  Q
    |||| |||||||||||||||||||||| || |||||||||| | ||||||    
T  31808566 caccgataataatttgagaaaatgacacaagtcaatgtaatcacatgtgt 31808517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 252 - 305
Target Start/End: Original strand, 37775982 - 37776035
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgtca 305  Q
    ||||||| || ||||||||||||||||||||| | |||||||| | ||||||||    
T  37775982 gacaccagtagtaatttgagaaaatgacataattaaatgtaatcacatgtgtca 37776035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 2525903 - 2525851
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgtc 304  Q
    |||||| ||||||||||||| ||||||||||| ||||| |||| | |||||||    
T  2525903 gacaccgataataatttgagcaaatgacataattcaatataatcatatgtgtc 2525851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 303
Target Start/End: Complemental strand, 36314679 - 36314635
Alignment:
Q  259 ataataatttgagaaaatgacataaatcaatgtaataaaatgtgt 303  Q
    ||||||||||||||||||||||||  |||||||||| | ||||||    
T  36314679 ataataatttgagaaaatgacatatttcaatgtaatcatatgtgt 36314635  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 260 - 310
Target Start/End: Complemental strand, 29198530 - 29198480
Alignment:
Q  260 taataatttgagaaaatgacataaatcaatgtaataaaatgtgtcaatgtc 310  Q
    |||||||||||||||||||||||| |||||||||| | ||| |||||||||    
T  29198530 taataatttgagaaaatgacataattcaatgtaatcatatgcgtcaatgtc 29198480  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 294
Target Start/End: Complemental strand, 34201105 - 34201063
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaat 294  Q
    ||||| |||||||||||||||||||||||||| ||||||||||    
T  34201105 gacactaataataatttgagaaaatgacataattcaatgtaat 34201063  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 252 - 294
Target Start/End: Original strand, 40063951 - 40063993
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaat 294  Q
    |||||||||||||||||||||||||||||||| ||| ||||||    
T  40063951 gacaccaataataatttgagaaaatgacataattcattgtaat 40063993  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 294
Target Start/End: Complemental strand, 37225801 - 37225760
Alignment:
Q  253 acaccaataataatttgagaaaatgacataaatcaatgtaat 294  Q
    |||||||||||||||||||||||| |||||| ||||||||||    
T  37225801 acaccaataataatttgagaaaataacataattcaatgtaat 37225760  T

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Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 293
Target Start/End: Original strand, 14227223 - 14227263
Alignment:
Q  253 acaccaataataatttgagaaaatgacataaatcaatgtaa 293  Q
    |||||||||||||||||||||||| |||||| |||||||||    
T  14227223 acaccaataataatttgagaaaataacataattcaatgtaa 14227263  T

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Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 258 - 309
Target Start/End: Original strand, 1639496 - 1639547
Alignment:
Q  258 aataataatttgagaaaatgacataaatcaatgtaataaaatgtgtcaatgt 309  Q
    ||||||| |||||||||||||||||| ||||||||||||  |||||| ||||    
T  1639496 aataatattttgagaaaatgacataattcaatgtaataacgtgtgtcgatgt 1639547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 251 - 294
Target Start/End: Original strand, 12985391 - 12985434
Alignment:
Q  251 agacaccaataataatttgagaaaatgacataaatcaatgtaat 294  Q
    ||||||| |||||||||||||||||| |||||| ||||||||||    
T  12985391 agacacctataataatttgagaaaatcacataattcaatgtaat 12985434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 294
Target Start/End: Original strand, 14740733 - 14740772
Alignment:
Q  255 accaataataatttgagaaaatgacataaatcaatgtaat 294  Q
    |||||||||||| |||||||||||||||| ||||||||||    
T  14740733 accaataataatgtgagaaaatgacataattcaatgtaat 14740772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 314
Target Start/End: Complemental strand, 24362253 - 24362199
Alignment:
Q  260 taataatttgagaaaatgacataaatcaatgtaataaaatgtgtcaatgtcgtgt 314  Q
    ||||||||||||| ||| |||||| ||| |||||| | |||||||||||||||||    
T  24362253 taataatttgagagaatcacataattcagtgtaattatatgtgtcaatgtcgtgt 24362199  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 296
Target Start/End: Original strand, 1433345 - 1433389
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaataa 296  Q
    ||||| |||| |||||||||||||||||||||  |||||||||||    
T  1433345 gacactaatagtaatttgagaaaatgacataatccaatgtaataa 1433389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 303
Target Start/End: Original strand, 3508059 - 3508103
Alignment:
Q  259 ataataatttgagaaaatgacataaatcaatgtaataaaatgtgt 303  Q
    |||||||||||||||||| |||||| |||||||||| | ||||||    
T  3508059 ataataatttgagaaaataacataattcaatgtaatcatatgtgt 3508103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 262 - 294
Target Start/End: Original strand, 10441213 - 10441245
Alignment:
Q  262 ataatttgagaaaatgacataaatcaatgtaat 294  Q
    |||||||||||||||||||||| ||||||||||    
T  10441213 ataatttgagaaaatgacataattcaatgtaat 10441245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Complemental strand, 31236628 - 31236584
Alignment:
Q  260 taataatttgagaaaatgacataaatcaatgtaataaaatgtgtc 304  Q
    ||||||||||||||||| |||||| |||||||||| | |||||||    
T  31236628 taataatttgagaaaatcacataattcaatgtaattatatgtgtc 31236584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 31548352 - 31548300
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgtc 304  Q
    |||||| ||||| |||||| |||||||||||| |||||||||| | |||||||    
T  31548352 gacaccgataattatttgataaaatgacataattcaatgtaatcacatgtgtc 31548300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 17)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 253 - 310
Target Start/End: Original strand, 2445871 - 2445928
Alignment:
Q  253 acaccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgtcaatgtc 310  Q
    |||||||| |||||||||||||||||||||| ||||| |||| | ||||||| |||||    
T  2445871 acaccaatgataatttgagaaaatgacataattcaatttaatcatatgtgtcgatgtc 2445928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 257 - 294
Target Start/End: Original strand, 3921672 - 3921709
Alignment:
Q  257 caataataatttgagaaaatgacataaatcaatgtaat 294  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  3921672 caataataatttgagaaaatgacataattcaatgtaat 3921709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 258 - 294
Target Start/End: Complemental strand, 21641742 - 21641706
Alignment:
Q  258 aataataatttgagaaaatgacataaatcaatgtaat 294  Q
    |||||||||||| ||||||||||||||||||||||||    
T  21641742 aataataatttgtgaaaatgacataaatcaatgtaat 21641706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 294
Target Start/End: Original strand, 11571592 - 11571627
Alignment:
Q  259 ataataatttgagaaaatgacataaatcaatgtaat 294  Q
    ||||||||||||||||||||||||| ||||||||||    
T  11571592 ataataatttgagaaaatgacataattcaatgtaat 11571627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 259 - 294
Target Start/End: Complemental strand, 40747825 - 40747790
Alignment:
Q  259 ataataatttgagaaaatgacataaatcaatgtaat 294  Q
    ||||||||||||||||||||||||| ||||||||||    
T  40747825 ataataatttgagaaaatgacataattcaatgtaat 40747790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 260 - 314
Target Start/End: Complemental strand, 7918262 - 7918208
Alignment:
Q  260 taataatttgagaaaatgacataaatcaatgtaataaaatgtgtcaatgtcgtgt 314  Q
    ||||||||||||||||| |||||| ||| |||||| | |||||||| ||||||||    
T  7918262 taataatttgagaaaatcacataattcagtgtaattatatgtgtcagtgtcgtgt 7918208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 294
Target Start/End: Complemental strand, 17080940 - 17080898
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaat 294  Q
    ||||||||||||||||||||||||| |||||| | ||||||||    
T  17080940 gacaccaataataatttgagaaaataacataattgaatgtaat 17080898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 314
Target Start/End: Original strand, 25361886 - 25361948
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgtcaatgtcgtgt 314  Q
    ||||||| | ||||||||||||||| |||||| ||| |||||| | |||||||| ||||||||    
T  25361886 gacaccactgataatttgagaaaatcacataattcagtgtaattatatgtgtcagtgtcgtgt 25361948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 294
Target Start/End: Original strand, 33202903 - 33202945
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaat 294  Q
    |||||| |||||||||| | |||||||||||||||||||||||    
T  33202903 gacaccgataataattttaaaaaatgacataaatcaatgtaat 33202945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 253 - 303
Target Start/End: Original strand, 42325561 - 42325611
Alignment:
Q  253 acaccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgt 303  Q
    ||||| ||||||||||||||||||||||||| ||| ||||| || ||||||    
T  42325561 acaccgataataatttgagaaaatgacataattcagtgtaacaatatgtgt 42325611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 252 - 294
Target Start/End: Original strand, 43942324 - 43942366
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaat 294  Q
    |||||||||||| |||||||||||| |||||| ||||||||||    
T  43942324 gacaccaataatgatttgagaaaataacataattcaatgtaat 43942366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 260 - 305
Target Start/End: Complemental strand, 30847771 - 30847726
Alignment:
Q  260 taataatttgagaaaatgacataaatcaatgtaataaaatgtgtca 305  Q
    ||||||||||| |||||||||||| |||||||||| | ||||||||    
T  30847771 taataatttgaaaaaatgacataattcaatgtaatcatatgtgtca 30847726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 304
Target Start/End: Complemental strand, 10572648 - 10572596
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgtc 304  Q
    ||||||| ||||||||||||||||| |||||| ||  |||||| |||||||||    
T  10572648 gacaccactaataatttgagaaaatcacataattcggtgtaattaaatgtgtc 10572596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 253 - 309
Target Start/End: Original strand, 10799671 - 10799727
Alignment:
Q  253 acaccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgtcaatgt 309  Q
    ||||| || ||||||||||||||| |||||| | |||||||||| || |||||||||    
T  10799671 acacccatgataatttgagaaaataacataatttaatgtaataacatctgtcaatgt 10799727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 252 - 304
Target Start/End: Original strand, 19637768 - 19637820
Alignment:
Q  252 gacaccaataataatttgagaaaatgacataaatcaatgtaataaaatgtgtc 304  Q
    |||||| |||||||||| |||||||||||| | |||||||||| | |||||||    
T  19637768 gacaccgataataatttaagaaaatgacattattcaatgtaatcatatgtgtc 19637820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 260 - 304
Target Start/End: Original strand, 29230073 - 29230117
Alignment:
Q  260 taataatttgagaaaatgacataaatcaatgtaataaaatgtgtc 304  Q
    |||||||||||||||||||||||| | |||||||||  |||||||    
T  29230073 taataatttgagaaaatgacataattgaatgtaatatcatgtgtc 29230117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 259 - 315
Target Start/End: Original strand, 43328474 - 43328530
Alignment:
Q  259 ataataatttgagaaaatgacataaatcaatgtaataaaatgtgtcaatgtcgtgtt 315  Q
    |||||||||||||||||||| |||| | |||||||  | |||||||| |||||||||    
T  43328474 ataataatttgagaaaatgaaataatttaatgtaaccacatgtgtcattgtcgtgtt 43328530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0320 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0320
Description:

Target: scaffold0320; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 260 - 303
Target Start/End: Complemental strand, 17087 - 17044
Alignment:
Q  260 taataatttgagaaaatgacataaatcaatgtaataaaatgtgt 303  Q
    |||||||||||||||||| |||||||||||||||| | ||||||    
T  17087 taataatttgagaaaatggcataaatcaatgtaattatatgtgt 17044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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