View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8262_low_5 (Length: 302)
Name: NF8262_low_5
Description: NF8262
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8262_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 48479827 - 48479546
Alignment:
| Q |
1 |
gtgtgagtcctccaagaacggaaagatatttattttccttagtactggtcaaattgtccaattgatgattacatccggtcctaagagtagttacgcacct |
100 |
Q |
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| T |
48479827 |
gtgtgagtcctccaagaacggaaagatatttattttccttagtactggtcaaattgtccaattgatgattacatccggtcctaagagtagttacgcacct |
48479728 |
T |
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| Q |
101 |
ccgttctccacgtagaaagaaagtgtgtttggttttggcaactcgtaatacatatacatttgtctcacaccacagggttaaggttaaggagtcttgactt |
200 |
Q |
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| T |
48479727 |
ccgttctccacgtagaaagaaagtgtgtttggttttggcaactcgtaatacatatacatttgtctcacaccacagggttaaggttaaggagtcttgactt |
48479628 |
T |
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| Q |
201 |
gagattccttaaacaatacaatacaatgttttcaaaacattttgctatcatcatccttgtcttcctctttctcacatcttac |
282 |
Q |
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| T |
48479627 |
gagattccttaaacaatacaatacaatgttttcaaaacattttgctatcatcatccttgtcttcctctttctcacatcttac |
48479546 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 213 - 282
Target Start/End: Original strand, 48882729 - 48882798
Alignment:
| Q |
213 |
acaatacaatacaatgttttcaaaacattttgctatcatcatccttgtcttcctctttctcacatcttac |
282 |
Q |
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| T |
48882729 |
acaatacaatacaatgttttcaaaacatttcgctatcatcatccctgtcttcctctttttcacatcttac |
48882798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 206 - 282
Target Start/End: Complemental strand, 48471256 - 48471184
Alignment:
| Q |
206 |
tccttaaacaatacaatacaatgttttcaaaacattttgctatcatcatccttgtcttcctctttctcacatcttac |
282 |
Q |
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| T |
48471256 |
tccttaaacaatacta-acaatgttttcaaaacatttttctatcttc---cttgtcttcctctttctcacatcttac |
48471184 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 8 - 54
Target Start/End: Complemental strand, 48471441 - 48471395
Alignment:
| Q |
8 |
tcctccaagaacggaaagatatttattttccttagtactggtcaaat |
54 |
Q |
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| T |
48471441 |
tcctccaagaacggaaaggtatttattttccttagtacccgtcaaat |
48471395 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 126 - 167
Target Start/End: Complemental strand, 48471345 - 48471304
Alignment:
| Q |
126 |
tgtttggttttggcaactcgtaatacatatacatttgtctca |
167 |
Q |
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| T |
48471345 |
tgtttggttttggcaacatgtaatacatatacatttgtctca |
48471304 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 279
Target Start/End: Complemental strand, 48488075 - 48488021
Alignment:
| Q |
222 |
tacaatgttttcaaaacattttgctatcatcatccttgtcttcctctttctcacatct |
279 |
Q |
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| T |
48488075 |
tacaatgatttcaaatcattttgctatcttc---cttgtcttcctctttctcacatct |
48488021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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