View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8263_high_4 (Length: 413)

Name: NF8263_high_4
Description: NF8263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8263_high_4
NF8263_high_4
[»] chr8 (2 HSPs)
chr8 (18-409)||(19785646-19786037)
chr8 (137-197)||(16401048-16401108)
[»] chr7 (2 HSPs)
chr7 (18-216)||(20581277-20581475)
chr7 (136-399)||(13250553-13250816)
[»] chr2 (2 HSPs)
chr2 (134-399)||(25534181-25534446)
chr2 (124-396)||(32441988-32442263)
[»] chr3 (2 HSPs)
chr3 (124-399)||(19577124-19577402)
chr3 (23-132)||(8772383-8772492)
[»] chr1 (1 HSPs)
chr1 (134-347)||(18829396-18829611)
[»] chr6 (4 HSPs)
chr6 (316-399)||(28586748-28586831)
chr6 (115-195)||(17884530-17884610)
chr6 (18-89)||(28587073-28587144)
chr6 (115-219)||(28586934-28587038)
[»] chr4 (1 HSPs)
chr4 (24-80)||(13130009-13130065)


Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 18 - 409
Target Start/End: Original strand, 19785646 - 19786037
Alignment:
Q  18 atcttcaagtattagagtgcaatttgatggtttcacttgaatcccttcgatctttcttatcaaagatgatggaatgctttcacttggaccacgccatgct 117  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  19785646 atcttcaagtattaaagttcaatttgatggtttcacttgaatcccttcgatctttcttatcaaagatgatgtaatgctttcacttggaccacgccatgct 19785745  T
Q  118 tttttaatggacaacgtcccaatagaattgaaacttcctgggttcttcttctttagaggtaactgtccttgagatattgcattacaatttctagttaatg 217  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  19785746 tttttaatggacaacttcccaatagaattgaaacttcctgggttcttcttcttttgaggtaactgtccttgagatattgcattacaatttctagttaatg 19785845  T
Q  218 tagccaagtcttctctcttcaacttttggggatatgatattttgatgaagtcaaggagtttgctaggattctcatttttatcaaggatttgtcgtatact 317  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||    
T  19785846 cagccaagtcttctctcttcaacttttggggatatgatattttgatgaagtcaaggagtttgctaggattctcatttttatcaaggatttatcgtatgct 19785945  T
Q  318 cattcttaaaatggaatctttgtctacaagaggctcgaacatttgggcattctgcttctctttgaactgagcttgaagtgttcatctcactc 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||| || ||||||    
T  19785946 cattcttaaaatggaatctttgtctacaagaggctcgaacatttggccattctgcttctctttgaactgagcttaaagtgttgatttcactc 19786037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 197
Target Start/End: Original strand, 16401048 - 16401108
Alignment:
Q  137 caatagaattgaaacttcctgggttcttcttctttagaggtaactgtccttgagatattgc 197  Q
    |||||||||||||||||||  ||| ||||||||||||||||||  |||||||| |||||||    
T  16401048 caatagaattgaaacttccaaggtccttcttctttagaggtaatcgtccttgaaatattgc 16401108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 20581277 - 20581475
Alignment:
Q  18 atcttcaagtattagagtgcaatttgatggtttcacttgaatcccttcgatctttcttatcaaagatgatggaatgctttcacttggaccacgccatgct 117  Q
    |||| ||||| |||||| ||||||||||||||| |  ||||| ||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||    
T  20581277 atctgcaagtgttagagggcaatttgatggttttaactgaattccttcgatctttcttatcagagatgatggaatactttcacttggaccacaccatgct 20581376  T
Q  118 tttttaatggacaacgtcccaatagaattgaaacttcctgggttcttcttctttagaggtaactgtccttgagatattgcattacaatttctagttaat 216  Q
    ||||||||||||||| ||||||||||||||||  ||||||| | ||||||| || ||||||||   | ||||||||||||||||||| |||| ||||||    
T  20581377 tttttaatggacaacttcccaatagaattgaaggttcctggctccttcttcgtttgaggtaaccaccattgagatattgcattacaacttctggttaat 20581475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 136 - 399
Target Start/End: Complemental strand, 13250816 - 13250553
Alignment:
Q  136 ccaatagaattgaaacttcctgggttcttcttctttagaggtaactgtccttgagatattgcattacaatttctagttaatgtagccaagtcttctctct 235  Q
    |||||||||||||||||||| |||| |||||||||||| ||||| ||||||||| ||||||| |||||| | |  |  |||| |  |   |||| |||||    
T  13250816 ccaatagaattgaaacttccagggtccttcttctttaggggtaattgtccttgaaatattgctttacaactcccggcaaatgcaatcggatcttttctct 13250717  T
Q  236 tcaacttttggggatatgatattttgatgaagtcaaggagtttgctaggattctcatttttatcaaggatttgtcgtatactcattcttaaaatggaatc 335  Q
    ||||||| ||||||||  | |  ||||| || ||| ||| | |||  || |||||| ||| |||||| |||||  || ||||  |||||||||| |||||    
T  13250716 tcaacttgtggggatacaacaacttgataaactcagggattctgcaggggttctcactttcatcaagaatttgatgtttacttgttcttaaaatagaatc 13250617  T
Q  336 tttgtctacaagaggctcgaacatttgggcattctgcttctctttgaactgagcttgaagtgtt 399  Q
    |||||| |||| |||| |||||||| ||| |||||||| |||||||||||| | ||| ||||||    
T  13250616 tttgtcgacaaaaggcccgaacattggggaattctgctcctctttgaactgggattgtagtgtt 13250553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 102; Significance: 2e-50; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 134 - 399
Target Start/End: Original strand, 25534181 - 25534446
Alignment:
Q  134 tcccaatagaattgaaacttcctgggttcttcttctttagaggtaactgtccttgagatattgcattacaatttctagttaatgtagccaagtcttctct 233  Q
    |||||||||||||||||||||| |||  ||||||||||||||||||| |||||||| ||| ||| |||||| ||||    ||||||| || ||||| |||    
T  25534181 tcccaatagaattgaaacttccagggcccttcttctttagaggtaaccgtccttgaaatagtgccttacaacttctgtcaaatgtagtcatgtcttttct 25534280  T
Q  234 cttcaacttttggggatatgatattttgatgaagtcaaggagtttgctaggattctcatttttatcaaggatttgtcgtatactcattcttaaaatggaa 333  Q
    ||||| |||||||| ||| || |  | ||| |||| | ||||| ||| ||| |||||| ||| |||||| ||||||||| ||||||||||||||||||||    
T  25534281 cttcatcttttgggaatacgacaactggataaagttagggagtctgcaagggttctcactttcatcaagaatttgtcgtctactcattcttaaaatggaa 25534380  T
Q  334 tctttgtctacaagaggctcgaacatttgggcattctgcttctctttgaactgagcttgaagtgtt 399  Q
    ||||| ||  ||| ||||||||| ||| ||| ||||| ||||||||||||||| ||||||||||||    
T  25534381 tctttatcgtcaataggctcgaatattagggtattcttcttctctttgaactgggcttgaagtgtt 25534446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 124 - 396
Target Start/End: Complemental strand, 32442263 - 32441988
Alignment:
Q  124 atggacaacgtcccaatagaattgaaacttcctgggttcttc---ttctttagaggtaactgtccttgagatattgcattacaatttctagttaatgtag 220  Q
    ||||||||| ||||||||||||||||||||| |||||  ||    || ||| |||||  | |||||||| ||||||||||||  || |  |||| |||||    
T  32442263 atggacaacttcccaatagaattgaaacttcttgggtcattactattattttgaggttgccgtccttgaaatattgcattacggttcccggttagtgtag 32442164  T
Q  221 ccaagtcttctctcttcaacttttggggatatgatattttgatgaagtcaaggagtttgctaggattctcatttttatcaaggatttgtcgtatactcat 320  Q
       | ||||||||||||||||| |||||||||||||  || | | ||| | |||  | || |||||||||| |||  ||||||||||||| | |||||||    
T  32442163 tagattcttctctcttcaacttatggggatatgataaatttacgtagtaagggatctcgcgaggattctcactttcttcaaggatttgtcatctactcat 32442064  T
Q  321 tcttaaaatggaatctttgtctacaagaggctcgaacatttgggcattctgcttctctttgaactgagcttgaagt 396  Q
    ||| ||||||||||||| ||| |||||||||| ||||||| |||||||| |||||||||||||||| | |||||||    
T  32442063 tctcaaaatggaatcttcgtcaacaagaggcttgaacattggggcattcagcttctctttgaactgggtttgaagt 32441988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 73; Significance: 3e-33; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 124 - 399
Target Start/End: Complemental strand, 19577402 - 19577124
Alignment:
Q  124 atggacaacgtcccaatagaattgaaacttcctgggttcttcttctttagaggtaactgtccttgagatattgcattacaatttctagtt---aatgtag 220  Q
    ||||||||| |||||||||||||||||||||  |||||||||||||||| ||||||   ||||||| ||||||| |||||  ||||  |    |||||||    
T  19577402 atggacaacttcccaatagaattgaaacttctagggttcttcttctttaaaggtaatcatccttgaaatattgccttacagcttcttctggaaaatgtag 19577303  T
Q  221 ccaagtcttctctcttcaacttttggggatatgatattttgatgaagtcaaggagtttgctaggattctcatttttatcaaggatttgtcgtatactcat 320  Q
      |  |||| |||||| ||||| |||| ||  || |  | | | |||| | ||||||||| ||| |||||| ||| |||||  ||||||||| |||||||    
T  19577302 ttagatcttttctctttaacttctgggaattcgacaactggctaaagttagggagtttgcaagggttctcactttaatcaataatttgtcgtctactcat 19577203  T
Q  321 tcttaaaatggaatctttgtctacaagaggctcgaacatttgggcattctgcttctctttgaactgagcttgaagtgtt 399  Q
    | ||||||||||||||||||| |||| ||||  ||| ||| ||| ||||||||||||||||||||| ||||||||||||    
T  19577202 tattaaaatggaatctttgtcgacaataggcatgaatattggggtattctgcttctctttgaactgggcttgaagtgtt 19577124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 23 - 132
Target Start/End: Original strand, 8772383 - 8772492
Alignment:
Q  23 caagtattagagtgcaatttgatggtttcacttgaatcccttcgatctttcttatcaaagatgatggaatgctttcacttggaccacgccatgctttttt 122  Q
    ||||| |||||| | ||||||||||||| || ||||| |||| ||||||||||| || ||||||||||||||||||||   ||| || ||||||||||||    
T  8772383 caagtgttagagggaaatttgatggttttacctgaattcctttgatctttcttaccagagatgatggaatgctttcaccctgactacaccatgctttttt 8772482  T
Q  123 aatggacaac 132  Q
    ||||||||||    
T  8772483 aatggacaac 8772492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 134 - 347
Target Start/End: Original strand, 18829396 - 18829611
Alignment:
Q  134 tcccaatagaattgaaacttcctgggttcttcttctttagaggtaactgtccttgagatattgcattacaatttctagttaatgtagccaagtcttctct 233  Q
    |||||||||||||||||||||| | || ||||||||||| ||||| |||||||||| ||||||  |||||  |||  |  |||| || || || || |||    
T  18829396 tcccaatagaattgaaacttccagagtccttcttctttaaaggtatctgtccttgaaatattgtcttacagcttccggcaaatgcagtcaggtattttct 18829495  T
Q  234 cttcaacttttggggatatgatattttgatgaagtcaaggagtttgctaggattctcatttttatcaaggatttgtcg--tatactcattcttaaaatgg 331  Q
    ||||||||| ||||||||||| |  ||||| |||||| ||| | ||| |||  | | | ||| |||||| |||| |||  || |||||||||||||||||    
T  18829496 cttcaacttatggggatatgacaacttgataaagtcagggaatctgcaaggtctattactttcatcaagaatttttcgtctacactcattcttaaaatgg 18829595  T
Q  332 aatctttgtctacaag 347  Q
    || ||||||| |||||    
T  18829596 aacctttgtcaacaag 18829611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 316 - 399
Target Start/End: Complemental strand, 28586831 - 28586748
Alignment:
Q  316 ctcattcttaaaatggaatctttgtctacaagaggctcgaacatttgggcattctgcttctctttgaactgagcttgaagtgtt 399  Q
    |||| ||| ||||||||| |||| || |||||||||||||||||| ||||||||||||||||||||||||| | ||||| ||||    
T  28586831 ctcactctcaaaatggaagctttatcaacaagaggctcgaacattggggcattctgcttctctttgaactgggtttgaactgtt 28586748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 115 - 195
Target Start/End: Complemental strand, 17884610 - 17884530
Alignment:
Q  115 gcttttttaatggacaacgtcccaatagaattgaaacttcctgggttcttcttctttagaggtaactgtccttgagatatt 195  Q
    |||| ||| ||| ||||| |||||||||||||||||||||| |||| |||||||||| ||||||||| | ||||| |||||    
T  17884610 gcttcttttatgaacaacttcccaatagaattgaaacttccagggtccttcttctttggaggtaactatgcttgaaatatt 17884530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 18 - 89
Target Start/End: Complemental strand, 28587144 - 28587073
Alignment:
Q  18 atcttcaagtattagagtgcaatttgatggtttcacttgaatcccttcgatctttcttatcaaagatgatgg 89  Q
    |||| ||||| |||||||| || |||||| ||| || ||||| ||||||||||||||||||||  |||||||    
T  28587144 atctgcaagtgttagagtgtaacttgatgattttacctgaattccttcgatctttcttatcaattatgatgg 28587073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 115 - 219
Target Start/End: Complemental strand, 28587038 - 28586934
Alignment:
Q  115 gcttttttaatggacaacgtcccaatagaattgaaacttcctgggttcttcttctttagaggtaactgtccttgagatattgcattacaatttctagtta 214  Q
    |||| ||| ||| ||||| | |||||||||||||||||||||||   ||||||  || |||||| | |||||||| |||| ||||| || ||||| ||||    
T  28587038 gcttcttttatgaacaactttccaatagaattgaaacttcctggacccttcttagtttgaggtagccgtccttgaaatatggcatttcagtttctggtta 28586939  T
Q  215 atgta 219  Q
     ||||    
T  28586938 gtgta 28586934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 80
Target Start/End: Complemental strand, 13130065 - 13130009
Alignment:
Q  24 aagtattagagtgcaatttgatggtttcacttgaatcccttcgatctttcttatcaa 80  Q
    |||| |||||||| ||||||||||||| || |||||  |||||||||||||||||||    
T  13130065 aagtgttagagtgaaatttgatggttttacctgaatttcttcgatctttcttatcaa 13130009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University