View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8263_low_10 (Length: 394)
Name: NF8263_low_10
Description: NF8263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8263_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 296; Significance: 1e-166; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 42 - 375
Target Start/End: Complemental strand, 30810542 - 30810205
Alignment:
| Q |
42 |
catgtgttcatggatatagccgcgagccattattgtgtcaatattatattataatcatttgttaaaagaaggactaatgaatattgaagatagaataagt |
141 |
Q |
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| T |
30810542 |
catgtgttcatggatatagccgcgagccattgttgtgtcaatattatattataatcatttgttaaaagaaggactaatcaatattgaagatagaataagt |
30810443 |
T |
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| Q |
142 |
aaataaatgttgaa--gagtttttatagtgtaaaagaaatttgaaggtaactatgtatttatata--atatagtagatgaagaggggtagacatacacat |
237 |
Q |
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| T |
30810442 |
aaataaatgttgaatagagtttttatagtgtaaaagaaatttgaaggtaactttgtatttatatataatatagtagatgaagagaggtagacatacacat |
30810343 |
T |
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| Q |
238 |
ttaatgtgaggggagattgtgtgttcaaaacaaaaatgtgaagggaggttgtgcgtggagggggtgaagagaggttgaaagggaaaataaatgtgaaggg |
337 |
Q |
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| T |
30810342 |
ttaatgtgaggggagattgtgtgttcaaaacaaaaatgtgaagggaggttgtgcgtggagggggtgaagagaggttgaaagggaaaataaatgtgaaggg |
30810243 |
T |
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| Q |
338 |
aggatttatttaacctgtacttaaagagtaggtgaaga |
375 |
Q |
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| T |
30810242 |
aggatttatttaacttgtacttaaagagtaggtgaaga |
30810205 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 29 - 139
Target Start/End: Complemental strand, 30815028 - 30814920
Alignment:
| Q |
29 |
tattaggatatatcatgtgttcatggatatagccgcgagccattattgtgtcaatattatattataatcatttgttaaaagaaggactaatgaatattga |
128 |
Q |
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| T |
30815028 |
tattagcatatatcatgtattcata-atctagtcgtgagtcattgttgtgtcaatattatattataatcatttgttaaaagaa-gaccaatcaatattga |
30814931 |
T |
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| Q |
129 |
agatagaataa |
139 |
Q |
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| T |
30814930 |
aaataaaataa |
30814920 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 55 - 140
Target Start/End: Complemental strand, 30820209 - 30820124
Alignment:
| Q |
55 |
atatagccgcgagccattattgtgtcaatattatattataatcatttgttaaaagaaggactaatgaatattgaagatagaataag |
140 |
Q |
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| T |
30820209 |
atatagccgtgagtcactgttgtgccaatattatattatagtcatttgttaaaagaaggaccaatcaatattgaagttcgaataag |
30820124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 301 - 343
Target Start/End: Complemental strand, 30814661 - 30814619
Alignment:
| Q |
301 |
gtgaagagaggttgaaagggaaaataaatgtgaagggaggatt |
343 |
Q |
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| T |
30814661 |
gtgaagagaggttgaaaggcaaaataaatgtgaagggaggatt |
30814619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 300 - 375
Target Start/End: Complemental strand, 30814560 - 30814486
Alignment:
| Q |
300 |
ggtgaagagaggttgaaagggaaaataaatgtgaagggaggattta-tttaacctgtacttaaagagtaggtgaaga |
375 |
Q |
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| T |
30814560 |
ggtgaagagaggttgaaag--acaataaatgtgaagggagaattgaatttaacttgtacttaaaaagtaggtgaaga |
30814486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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