View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8263_low_11 (Length: 389)
Name: NF8263_low_11
Description: NF8263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8263_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 257; Significance: 1e-143; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 13 - 373
Target Start/End: Complemental strand, 6343468 - 6343114
Alignment:
| Q |
13 |
tggacatcatgggaagcgaatatggggtacatattgctatttacaccaacttaaaaaatgaataaaccgatctgaactgccgctgaaaaataccgagcaa |
112 |
Q |
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| T |
6343468 |
tggacgtcatgggaagcgaatatggggtacatatttctatttacatcaacttaaaaaatgaataaaccgatctgaactgccgctgaaaaatatcgagcaa |
6343369 |
T |
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| Q |
113 |
cagttaacttccgatgaattaagggaatgaacaattatgaaatgaatttgagcaatttttgaaatataataggcaaggtcgaactaaattttgcaagacc |
212 |
Q |
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| T |
6343368 |
cagttaacttccaatgaattaagcgaatgaacaattatgaaatagatttgagcaatttttgaaata-----ggca-ggtcgaactaaattttgcaagact |
6343275 |
T |
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| Q |
213 |
taagtataatctgtcagaaaatttaaggcctatgtctagcatgcggtctatcatagatttattttttaggtttaaatatgatattttgaaagtctgatac |
312 |
Q |
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| T |
6343274 |
taaggataatctgttaaaaaatttaaggcctgtatctagcatgcggtctatcataaatttattttttaggtttaaatatgacattttgaaagtctgatac |
6343175 |
T |
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| Q |
313 |
aacctactttttaacagctaattcatatgagcgatgaaggaaatagtgacaattgaaaatg |
373 |
Q |
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| T |
6343174 |
gacctaccttttaacagctaattcatatgagcgatgaaggaaatagtcacaattgaaaatg |
6343114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 127 - 326
Target Start/End: Complemental strand, 6342586 - 6342387
Alignment:
| Q |
127 |
tgaattaagggaatgaacaattatgaaatgaatttgagcaatttttgaaatataataggcaaggtcgaactaaattttgcaagacctaagtataatctgt |
226 |
Q |
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| T |
6342586 |
tgaattaatgggatgaataattaggacatggattagagcaatcttcaaaatataataggttaggccgaactaaattttgcaaaatctaagtctaatctac |
6342487 |
T |
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| Q |
227 |
cagaaaatttaaggcctatgtctagcatgcggtctatcatagatttattttttaggtttaaatatgatattttgaaagtctgatacaacctactttttaa |
326 |
Q |
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| T |
6342486 |
caaaatttttaagatcaatgtctagcatgtggcgtgtcgtaggtttattatttaggtttgaatgtgacattttaaaaatctgatatgacctactatttaa |
6342387 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 311
Target Start/End: Complemental strand, 9711030 - 9710930
Alignment:
| Q |
211 |
cctaagtataatctgtcagaaaatttaaggcctatgtctagcatgcggtctatcatagatttattttttaggtttaaatatgatattttgaaagtctgat |
310 |
Q |
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| T |
9711030 |
cctaagtctaatttgtcaaaaaatttaagacctaaatttaacatgcggtttatcatagacttatattttaaaactgaatttgatatttttaaagtctgat |
9710931 |
T |
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| Q |
311 |
a |
311 |
Q |
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| T |
9710930 |
a |
9710930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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