View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8263_low_12 (Length: 324)

Name: NF8263_low_12
Description: NF8263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8263_low_12
NF8263_low_12
[»] chr4 (15 HSPs)
chr4 (55-309)||(17451102-17451353)
chr4 (1-45)||(30274439-30274483)
chr4 (1-45)||(19164456-19164500)
chr4 (1-45)||(52741463-52741507)
chr4 (1-44)||(18107182-18107225)
chr4 (1-44)||(42822915-42822958)
chr4 (1-45)||(449521-449565)
chr4 (1-45)||(42777709-42777753)
chr4 (1-44)||(31863737-31863780)
chr4 (1-44)||(34005365-34005408)
chr4 (1-45)||(34322945-34322989)
chr4 (4-44)||(55854278-55854318)
chr4 (3-45)||(10563936-10563979)
chr4 (227-275)||(9394373-9394420)
chr4 (1-45)||(53487579-53487623)
[»] chr8 (4 HSPs)
chr8 (60-309)||(14378935-14379192)
chr8 (1-44)||(8446796-8446839)
chr8 (1-44)||(10584041-10584084)
chr8 (222-266)||(5322840-5322883)
[»] chr7 (4 HSPs)
chr7 (1-45)||(34231169-34231213)
chr7 (4-45)||(29114178-29114219)
chr7 (3-44)||(20037628-20037670)
chr7 (1-43)||(24752890-24752932)
[»] chr3 (6 HSPs)
chr3 (1-45)||(33121943-33121987)
chr3 (1-44)||(1764603-1764646)
chr3 (1-45)||(11639436-11639480)
chr3 (1-37)||(36634916-36634952)
chr3 (224-272)||(22974731-22974778)
chr3 (16-44)||(54559076-54559104)
[»] chr1 (11 HSPs)
chr1 (1-45)||(40292710-40292754)
chr1 (1-45)||(1395060-1395104)
chr1 (1-45)||(9903891-9903935)
chr1 (1-45)||(10722509-10722553)
chr1 (1-45)||(30111550-30111594)
chr1 (1-44)||(10711730-10711773)
chr1 (1-44)||(25592100-25592143)
chr1 (1-45)||(17707466-17707510)
chr1 (228-271)||(19050088-19050130)
chr1 (1-45)||(41061771-41061815)
chr1 (4-44)||(49968797-49968838)
[»] chr6 (3 HSPs)
chr6 (1-44)||(6831557-6831600)
chr6 (1-45)||(17079817-17079861)
chr6 (224-277)||(22795628-22795680)
[»] chr2 (3 HSPs)
chr2 (1-44)||(1379570-1379613)
chr2 (1-44)||(3000374-3000417)
chr2 (1-44)||(7075583-7075626)
[»] chr5 (2 HSPs)
chr5 (1-45)||(27895375-27895419)
chr5 (1-44)||(4416326-4416369)
[»] scaffold0227 (1 HSPs)
scaffold0227 (1-45)||(8414-8458)
[»] scaffold0007 (1 HSPs)
scaffold0007 (1-44)||(181600-181643)
[»] scaffold0481 (1 HSPs)
scaffold0481 (1-45)||(1343-1387)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 55 - 309
Target Start/End: Complemental strand, 17451353 - 17451102
Alignment:
Q  55 ttcaagattttttaagaaggaaaagttcatgtttttattatttagaaaataattcatgcatacatgttttgtaacttttaatagcttcgttaataatata 154  Q
    ||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17451353 ttcaagattttttaag---gaaaagttcatgtttttattatttagaaaataattcatgcatacatgttttgtaacttttaatagcttcgttaataatata 17451257  T
Q  155 aactctaaagagcaatgagtacatttgttgtcctcaattctctcattcattaatgattcatcaatcctttgcaaaacaacaacaagctataattgtccct 254  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||| ||| |||||||||||| ||||||||||||| ||||    
T  17451256 aactctaaagagcaatgagtacatttgttgtcctcgattctctcattcattaatgatccatcaaccctctgcaaaacaacagcaagctataattgcccct 17451157  T
Q  255 ttcgagccaaacaatctgaaacagatttcttagaacacgacgtcgtgacacaaac 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  17451156 ttcgagccaaacaatctgaaacagatttcttagaacacgacgtcgtgacataaac 17451102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 30274439 - 30274483
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgttc 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  30274439 aagagttgcttttggtgattaatataattccatttttgattgttc 30274483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 19164500 - 19164456
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgttc 45  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  19164500 aagagttgcttttggtggttaatataattccatttttgattgttc 19164456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 52741463 - 52741507
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgttc 45  Q
    ||||||||||||||||||||||||||||| |||||||||||||||    
T  52741463 aagagttgcttttggtgattaatataatttcatttttgattgttc 52741507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 18107182 - 18107225
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgtt 44  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  18107182 aagagttgcttttggtgattaatataattccattttttattgtt 18107225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 42822958 - 42822915
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgtt 44  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  42822958 aagagttgcttttggtgatttatataattccatttttgattgtt 42822915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 449565 - 449521
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgttc 45  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||    
T  449565 aagagttgcttttcgtgattaatataattccattttttattgttc 449521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 42777753 - 42777709
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgttc 45  Q
    ||||||||||||||||||||| |||||||||||||||| ||||||    
T  42777753 aagagttgcttttggtgattattataattccatttttgtttgttc 42777709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 31863780 - 31863737
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgtt 44  Q
    ||||||||||||||||| |||||||||||||||||||| |||||    
T  31863780 aagagttgcttttggtggttaatataattccatttttgtttgtt 31863737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 34005408 - 34005365
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgtt 44  Q
    ||||||||||||||||| |||||||||||||||||||| |||||    
T  34005408 aagagttgcttttggtggttaatataattccatttttgtttgtt 34005365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 34322945 - 34322989
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgttc 45  Q
    |||||||| ||||||||||| |||||||||||||||| |||||||    
T  34322945 aagagttgtttttggtgatttatataattccattttttattgttc 34322989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 55854318 - 55854278
Alignment:
Q  4 agttgcttttggtgattaatataattccatttttgattgtt 44  Q
    ||||||||||  |||||||||||||||||||||||||||||    
T  55854318 agttgcttttaatgattaatataattccatttttgattgtt 55854278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 45
Target Start/End: Original strand, 10563936 - 10563979
Alignment:
Q  3 gagttgcttttggtgattaatata-attccatttttgattgttc 45  Q
    ||||||||||||||| |||||||| |||||||||||||||||||    
T  10563936 gagttgcttttggtgtttaatatatattccatttttgattgttc 10563979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 227 - 275
Target Start/End: Original strand, 9394373 - 9394420
Alignment:
Q  227 aaaacaacaacaagctataattgtccctttcgagccaaacaatctgaaa 275  Q
    ||||||||||||||||||||||| |||||||||||| ||| ||| ||||    
T  9394373 aaaacaacaacaagctataattg-ccctttcgagccgaaccatcagaaa 9394420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 53487579 - 53487623
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgttc 45  Q
    ||||||||||||| |||||| |||||||||||||| | |||||||    
T  53487579 aagagttgctttttgtgatttatataattccatttcttattgttc 53487623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 124; Significance: 9e-64; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 124; E-Value: 9e-64
Query Start/End: Original strand, 60 - 309
Target Start/End: Complemental strand, 14379192 - 14378935
Alignment:
Q  60 gattttttaagaaggaaaagttcatgtttttattatttagaaaataattcatgcatacatgttttgta---acttttaatagcttcgttaataatataaa 156  Q
    |||||||||||  ||||||||||||| |||||||||||||||||||||  |||||| |||||||||||   | ||||||||| |||||||||||||||||    
T  14379192 gattttttaagtgggaaaagttcatgcttttattatttagaaaataatgtatgcatgcatgttttgtagtaagttttaatagtttcgttaataatataaa 14379093  T
Q  157 ctctaaagagcaatgagtacatttgttgtcctcaattctctcattcattaatgattcatcaatcctttg-----caaaacaacaacaagctataattgtc 251  Q
    ||||| |||||||||||| |||||||||||||| ||||||||||||||| ||||| ||||||  || ||     |||||||||| |||| |||||||| |    
T  14379092 ctctatagagcaatgagtgcatttgttgtcctcgattctctcattcattgatgatccatcaactctctgcaaaacaaaacaacagcaagttataattgac 14378993  T
Q  252 cctttcgagccaaacaatctgaaacagatttcttagaacacgacgtcgtgacacaaac 309  Q
    |||||| || ||||||||||||||||||| | ||||||||||| |||||||| |||||    
T  14378992 cctttcaagtcaaacaatctgaaacagatcttttagaacacgatgtcgtgacgcaaac 14378935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 8446796 - 8446839
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgtt 44  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  8446796 aagagttgcttttgatgattaatataattccatttttgattgtt 8446839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 10584041 - 10584084
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgtt 44  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  10584041 aagagttgcttttggtgattaatataatttcatttttgattgtt 10584084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 222 - 266
Target Start/End: Complemental strand, 5322883 - 5322840
Alignment:
Q  222 tttgcaaaacaacaacaagctataattgtccctttcgagccaaac 266  Q
    ||||||||||||||||||||||||||| | ||||||||| |||||    
T  5322883 tttgcaaaacaacaacaagctataatt-ttcctttcgagtcaaac 5322840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 34231213 - 34231169
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgttc 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  34231213 aagagttgcttttggtgattaatataattccatttttgattgttc 34231169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 4 - 45
Target Start/End: Original strand, 29114178 - 29114219
Alignment:
Q  4 agttgcttttggtgattaatataattccatttttgattgttc 45  Q
    ||||||||||||||||||||||||||||||||||||||||||    
T  29114178 agttgcttttggtgattaatataattccatttttgattgttc 29114219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 44
Target Start/End: Original strand, 20037628 - 20037670
Alignment:
Q  3 gagttgcttttggtgattaatata-attccatttttgattgtt 44  Q
    ||||||||||||||| |||||||| ||||||||||||||||||    
T  20037628 gagttgcttttggtggttaatatatattccatttttgattgtt 20037670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 24752932 - 24752890
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgt 43  Q
    ||||| ||||||||||| |||||||||||| ||||||||||||    
T  24752932 aagagctgcttttggtggttaatataattctatttttgattgt 24752890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 45; Significance: 1e-16; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 33121943 - 33121987
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgttc 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  33121943 aagagttgcttttggtgattaatataattccatttttgattgttc 33121987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 1764646 - 1764603
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgtt 44  Q
    ||||||||||||||||||||||||||||| ||||||||||||||    
T  1764646 aagagttgcttttggtgattaatataatttcatttttgattgtt 1764603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 11639480 - 11639436
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgttc 45  Q
    |||||||| |||||||| |||||||||||||||||||||||||||    
T  11639480 aagagttgattttggtggttaatataattccatttttgattgttc 11639436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 36634952 - 36634916
Alignment:
Q  1 aagagttgcttttggtgattaatataattccattttt 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  36634952 aagagttgcttttggtgattaatataattccattttt 36634916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 224 - 272
Target Start/End: Complemental strand, 22974778 - 22974731
Alignment:
Q  224 tgcaaaacaacaacaagctataattgtccctttcgagccaaacaatctg 272  Q
    |||||||| |||||||||||||||| | ||||||||||||||| |||||    
T  22974778 tgcaaaaccacaacaagctataatt-ttcctttcgagccaaaccatctg 22974731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 16 - 44
Target Start/End: Original strand, 54559076 - 54559104
Alignment:
Q  16 tgattaatataattccatttttgattgtt 44  Q
    |||||||||||||||||||||||||||||    
T  54559076 tgattaatataattccatttttgattgtt 54559104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 1e-16; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 40292710 - 40292754
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgttc 45  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  40292710 aagagttgcttttggtgattaatataattccatttttgattgttc 40292754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 1395060 - 1395104
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgttc 45  Q
    |||||||| |||||||| |||||||||||||||||||||||||||    
T  1395060 aagagttgtttttggtggttaatataattccatttttgattgttc 1395104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 9903891 - 9903935
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgttc 45  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||    
T  9903891 aagagttgcttttggtggttaacataattccatttttgattgttc 9903935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 10722553 - 10722509
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgttc 45  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||    
T  10722553 aagagttgcttttggtggttaatataattccatttttgtttgttc 10722509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 30111550 - 30111594
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgttc 45  Q
    |||||||| ||||| ||||||||||||||||||||||||||||||    
T  30111550 aagagttgtttttgatgattaatataattccatttttgattgttc 30111594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 10711730 - 10711773
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgtt 44  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||    
T  10711730 aagagttgcttttggtggttaatataatttcatttttgattgtt 10711773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 25592100 - 25592143
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgtt 44  Q
    ||||||||||||||||| |||||||||||||||||||| |||||    
T  25592100 aagagttgcttttggtggttaatataattccatttttgtttgtt 25592143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 17707510 - 17707466
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgttc 45  Q
    ||||||||||| ||||||||||||||||| | |||||||||||||    
T  17707510 aagagttgcttgtggtgattaatataatttcttttttgattgttc 17707466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 271
Target Start/End: Complemental strand, 19050130 - 19050088
Alignment:
Q  228 aaacaacaacaagctataattgtccctttcgagccaaacaatct 271  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||    
T  19050130 aaacaacaacaagctataatt-tccctttcgagccaaaccatct 19050088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 41061771 - 41061815
Alignment:
Q  1 aagagttgcttttggtgattaatata-attccatttttgattgttc 45  Q
    ||||||||||||||||| |||||||| |||||||||||||||||||    
T  41061771 aagagttgcttttggtg-ttaatatatattccatttttgattgttc 41061815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 49968838 - 49968797
Alignment:
Q  4 agttgcttttggtgattaatat-aattccatttttgattgtt 44  Q
    |||||||||||||| ||||||| |||||||||||||||||||    
T  49968838 agttgcttttggtggttaatataaattccatttttgattgtt 49968797  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 6831557 - 6831600
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgtt 44  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  6831557 aagagttgcttttggtgattaatataattccatttttgattgtt 6831600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 17079817 - 17079861
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgttc 45  Q
    ||||||| ||||||||| |||||||||||||||||||||||||||    
T  17079817 aagagtttcttttggtggttaatataattccatttttgattgttc 17079861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 224 - 277
Target Start/End: Original strand, 22795628 - 22795680
Alignment:
Q  224 tgcaaaacaacaacaagctataattgtccctttcgagccaaacaatctgaaaca 277  Q
    |||||||| |||||||||||||||| ||||||||||| ||||| || |||||||    
T  22795628 tgcaaaaccacaacaagctataatt-tccctttcgagtcaaaccatttgaaaca 22795680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 44; Significance: 5e-16; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 1379613 - 1379570
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgtt 44  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  1379613 aagagttgcttttggtgattaatataattccatttttgattgtt 1379570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 3000374 - 3000417
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgtt 44  Q
    ||||||||||||||||||||||||||||||||||||| ||||||    
T  3000374 aagagttgcttttggtgattaatataattccattttttattgtt 3000417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 7075626 - 7075583
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgtt 44  Q
    |||||||||||||| |||||||||||||||||||||| ||||||    
T  7075626 aagagttgcttttgatgattaatataattccattttttattgtt 7075583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 27895419 - 27895375
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgttc 45  Q
    ||||||||||||||||| |||||||||||||||||||||||||||    
T  27895419 aagagttgcttttggtggttaatataattccatttttgattgttc 27895375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 4416326 - 4416369
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgtt 44  Q
    |||||||||||||||||||| |||||||||||||||| ||||||    
T  4416326 aagagttgcttttggtgatttatataattccattttttattgtt 4416369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 8414 - 8458
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgttc 45  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||    
T  8414 aagagttgcttttggtggttaatataattccatttttgtttgttc 8458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 181643 - 181600
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgtt 44  Q
    ||||||||||||||||| |||||||||||||||||||| |||||    
T  181643 aagagttgcttttggtggttaatataattccatttttgtttgtt 181600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0481 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 1387 - 1343
Alignment:
Q  1 aagagttgcttttggtgattaatataattccatttttgattgttc 45  Q
    |||||||| |||| ||||||||||||||||||||||| |||||||    
T  1387 aagagttgtttttagtgattaatataattccattttttattgttc 1343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University