View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8263_low_14 (Length: 289)
Name: NF8263_low_14
Description: NF8263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8263_low_14 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 269; Significance: 1e-150; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 17 - 289
Target Start/End: Complemental strand, 44210570 - 44210298
Alignment:
| Q |
17 |
catcataccaacccaaggtctactgcatcaaccagcaacgcccatcataccaacccaaggcaagcagtttgttcgcactgtcaagaaacagggcattctt |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44210570 |
catcataccaacccaaggtctactgcatcaaccagcaacgcccatcataccaacccaaggcaagcagtttgttcgcactgtcaagaaacagggcattctt |
44210471 |
T |
|
| Q |
117 |
ctaatgactgtccttcacagactcgacgctccaggaatccccaatatcctggaatgaaccaacaaaatagtaagatttctggaattttaaaatgccacag |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
|
|
| T |
44210470 |
ctaatgactgtccttcacagactcgacgctccaggaatccccaatatcctggaatgaaccaacaaaatggtaagatttctggaattttaaaatgccacag |
44210371 |
T |
|
| Q |
217 |
cagaatagacagcctagagaaataagaattgtaaattttggacattaggaaattagcaagcagtgagagtcaa |
289 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44210370 |
cagaatagacagcctagagaaataagaattgtaaattttggacattaggaaattagcaagcagtgagagtcaa |
44210298 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 36 - 76
Target Start/End: Complemental strand, 44210593 - 44210553
Alignment:
| Q |
36 |
ctactgcatcaaccagcaacgcccatcataccaacccaagg |
76 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44210593 |
ctactgcatcaaccagcaacgtccatcataccaacccaagg |
44210553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University