View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8263_low_15 (Length: 285)

Name: NF8263_low_15
Description: NF8263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8263_low_15
NF8263_low_15
[»] chr1 (14 HSPs)
chr1 (45-270)||(4955991-4956216)
chr1 (1-54)||(22077605-22077658)
chr1 (1-54)||(66582-66635)
chr1 (1-54)||(39066310-39066363)
chr1 (1-56)||(22077938-22077993)
chr1 (1-54)||(5320075-5320128)
chr1 (1-54)||(24600424-24600477)
chr1 (1-54)||(34364502-34364555)
chr1 (1-54)||(41184535-41184588)
chr1 (3-54)||(44685451-44685502)
chr1 (1-54)||(1188698-1188751)
chr1 (1-54)||(31767271-31767324)
chr1 (3-54)||(66200-66252)
chr1 (2-54)||(3875442-3875494)
[»] chr4 (10 HSPs)
chr4 (1-54)||(3244559-3244612)
chr4 (1-54)||(54741286-54741339)
chr4 (1-54)||(2740695-2740748)
chr4 (1-54)||(10245915-10245968)
chr4 (1-54)||(25483331-25483384)
chr4 (1-48)||(16888924-16888971)
chr4 (1-48)||(16889644-16889691)
chr4 (1-54)||(50002421-50002474)
chr4 (1-54)||(52884690-52884743)
chr4 (1-54)||(52884882-52884935)
[»] scaffold0078 (1 HSPs)
scaffold0078 (1-54)||(5352-5405)
[»] chr8 (4 HSPs)
chr8 (1-54)||(41972153-41972206)
chr8 (1-59)||(9608735-9608793)
chr8 (1-55)||(45122167-45122221)
chr8 (1-56)||(40518575-40518630)
[»] chr5 (7 HSPs)
chr5 (1-54)||(41632777-41632830)
chr5 (1-54)||(26074256-26074309)
chr5 (1-54)||(31509618-31509671)
chr5 (1-54)||(36568677-36568730)
chr5 (5-54)||(1028631-1028680)
chr5 (1-54)||(12662762-12662815)
chr5 (1-49)||(623818-623866)
[»] chr7 (15 HSPs)
chr7 (7-54)||(28301659-28301706)
chr7 (1-54)||(16569191-16569244)
chr7 (1-54)||(16596418-16596471)
chr7 (1-54)||(43241490-43241543)
chr7 (1-54)||(23487-23540)
chr7 (1-54)||(118411-118464)
chr7 (1-54)||(1085726-1085779)
chr7 (1-54)||(7517575-7517628)
chr7 (1-54)||(7554020-7554073)
chr7 (1-54)||(8128551-8128604)
chr7 (1-54)||(30245072-30245125)
chr7 (1-54)||(36109027-36109080)
chr7 (3-56)||(36622953-36623006)
chr7 (1-54)||(45433236-45433289)
chr7 (6-54)||(36967344-36967392)
[»] chr6 (5 HSPs)
chr6 (1-54)||(10074101-10074154)
chr6 (3-54)||(16107673-16107724)
chr6 (1-54)||(2579982-2580035)
chr6 (1-54)||(10074473-10074526)
chr6 (1-49)||(35210204-35210252)
[»] chr3 (9 HSPs)
chr3 (1-54)||(33175774-33175827)
chr3 (1-54)||(49336797-49336850)
chr3 (10-54)||(47965034-47965078)
chr3 (7-54)||(9240144-9240191)
chr3 (1-51)||(21832453-21832503)
chr3 (1-54)||(12114672-12114725)
chr3 (1-54)||(53577359-53577412)
chr3 (10-54)||(12747871-12747915)
chr3 (13-57)||(39336351-39336395)
[»] chr2 (8 HSPs)
chr2 (1-54)||(962593-962646)
chr2 (1-54)||(28531424-28531477)
chr2 (1-54)||(15880258-15880311)
chr2 (1-54)||(28254347-28254400)
chr2 (1-54)||(30313173-30313226)
chr2 (1-54)||(31468856-31468909)
chr2 (1-54)||(36785673-36785726)
chr2 (10-54)||(33561570-33561614)
[»] scaffold0734 (1 HSPs)
scaffold0734 (1-54)||(5772-5825)


Alignment Details
Target: chr1 (Bit Score: 185; Significance: 1e-100; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 45 - 270
Target Start/End: Complemental strand, 4956216 - 4955991
Alignment:
Q  45 ttgcacacaatagaactacatgctacaacctatatttcctttctctacttttttagaactgcatgcaagttctaagaacttaccagaaatctttgttgcn 144  Q
    ||||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     
T  4956216 ttgcacacaatagaactacctgctgccacctatatttcctttctctacttttttagaactgcatgcaagttctaagaacttaccagaaatctttgttgca 4956117  T
Q  145 nnnnnngtttaataaaagcaagagttgtcatcttttgacctaaaaactagattagacaaattaataatacttaactttaatttttgaaaaagaataatca 244  Q
          ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4956116 aaaaaagtttaataaaagcaagagttgtcatcttttgacctaaaaactagattagacaaattaataatacttaactttaatttttgaaaaagaataatca 4956017  T
Q  245 taaacggatatagatatgaatttgat 270  Q
    ||||| |||||||||||| |||||||    
T  4956016 taaacagatatagatatggatttgat 4955991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 22077605 - 22077658
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    ||||||||||||||||||||||||||||  |||||||||||| |||||||||||    
T  22077605 tcaacctttacttttctatccgatgtgagacatataactcacacttgcacacaa 22077658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 66582 - 66635
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||||||||||||||| || | |||||||||||| |||||||||||    
T  66582 tcaacctttacttttctatccgatatggaacatataactcacacttgcacacaa 66635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 39066310 - 39066363
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    ||||||||||||||||||||||||||| |  ||||||||||| |||||||||||    
T  39066310 tcaacctttacttttctatccgatgtggaatatataactcacacttgcacacaa 39066363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 56
Target Start/End: Original strand, 22077938 - 22077993
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaata 56  Q
    |||||||||| ||||||||||||| | || |||||||||||| |||||||||||||    
T  22077938 tcaacctttatttttctatccgatttaaaacatataactcacacttgcacacaata 22077993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 5320075 - 5320128
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    ||||| ||||||||||||||||||||| | |||||||||||| |||||| ||||    
T  5320075 tcaacttttacttttctatccgatgtggaacatataactcacacttgcatacaa 5320128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 24600424 - 24600477
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||||||||||||||| ||   |||||||||||| |||||||||||    
T  24600424 tcaacctttacttttctatccgatatgggacatataactcacacttgcacacaa 24600477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 34364555 - 34364502
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||| || ||||||||||||  |||||||||||| |||||||||||    
T  34364555 tcaacctttactattttatccgatgtgagacatataactcacacttgcacacaa 34364502  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 41184535 - 41184588
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||| || ||||||||||||  |||||||||||| |||||||||||    
T  41184535 tcaacctttactattttatccgatgtgagacatataactcacacttgcacacaa 41184588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 44685502 - 44685451
Alignment:
Q  3 aacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||||||||||||| ||   |||||||||||| |||||||||||    
T  44685502 aacctttacttttctatccgatatgggacatataactcacacttgcacacaa 44685451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 1188698 - 1188751
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||  ||||||||||||||| || | |||||||||||| |||||||||||    
T  1188698 tcaacctccacttttctatccgatatggaacatataactcacacttgcacacaa 1188751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 31767271 - 31767324
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||| || ||||||||||| | |||||||| ||| |||||||||||    
T  31767271 tcaacctttactgttttatccgatgtggaacatataacccacacttgcacacaa 31767324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 3 - 54
Target Start/End: Original strand, 66200 - 66252
Alignment:
Q  3 aacctttacttttctatccgatgtgaagcat-ataactcacccttgcacacaa 54  Q
    ||||||||||||||||||||||||||  ||| || |||||| |||||||||||    
T  66200 aacctttacttttctatccgatgtgagacatgattactcacacttgcacacaa 66252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 2 - 54
Target Start/End: Original strand, 3875442 - 3875494
Alignment:
Q  2 caacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||||| |||||||||||   ||||||||| || |||||||||||    
T  3875442 caacctttacttttttatccgatgtgtgacatataactgactcttgcacacaa 3875494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 3244559 - 3244612
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    ||||||||||||||||||||||||||||  |||||||||||| |||||||||||    
T  3244559 tcaacctttacttttctatccgatgtgagacatataactcacacttgcacacaa 3244612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 54741286 - 54741339
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    ||||||||||||||||||||||||||||  ||||||| |||| |||||||||||    
T  54741286 tcaacctttacttttctatccgatgtgagacatataattcacacttgcacacaa 54741339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 2740748 - 2740695
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||| ||||||||||||||   |||||||||||| |||||||||||    
T  2740748 tcaacctttactgttctatccgatgtgggacatataactcacacttgcacacaa 2740695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 10245968 - 10245915
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||| || |||||||||||  ||||||||||||| |||||||||||    
T  10245968 tcaacctttactcttttatccgatgtggggcatataactcacacttgcacacaa 10245915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 25483384 - 25483331
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||| || ||||||||||||  |||||||||||| |||||||||||    
T  25483384 tcaacctttactattttatccgatgtgagacatataactcacacttgcacacaa 25483331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 16888924 - 16888971
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgc 48  Q
    |||||||||||||||||||||||||||   |||||||||||| |||||    
T  16888924 tcaacctttacttttctatccgatgtgggacatataactcacacttgc 16888971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 16889644 - 16889691
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgc 48  Q
    |||||||||||||||||||||||| |||  |||||||||||| |||||    
T  16889644 tcaacctttacttttctatccgatttgagacatataactcacacttgc 16889691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 50002474 - 50002421
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||| || ||||||||||||  |||||||||||| |||||| ||||    
T  50002474 tcaacctttactcttttatccgatgtgagacatataactcacacttgcaaacaa 50002421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 52884743 - 52884690
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||| || |||||||||||   |||||||||||| |||||||||||    
T  52884743 tcaacctttactattttatccgatgtgggacatataactcacacttgcacacaa 52884690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 52884935 - 52884882
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||| || |||||||||||   |||||||||||| |||||||||||    
T  52884935 tcaacctttactattttatccgatgtgggacatataactcacacttgcacacaa 52884882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 5405 - 5352
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||| |||||||||||||| | |||||||||||| |||||||||||    
T  5405 tcaacctttactgttctatccgatgtggaacatataactcacacttgcacacaa 5352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 41972206 - 41972153
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||||||||||||||||||   |||||||||||| |||||||||||    
T  41972206 tcaacctttacttttctatccgatgtgggacatataactcacacttgcacacaa 41972153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 59
Target Start/End: Complemental strand, 9608793 - 9608735
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaatagaa 59  Q
    |||||||||||||||||||||||| ||   |||||||||||| ||||||||||| ||||    
T  9608793 tcaacctttacttttctatccgatatgggacatataactcacacttgcacacaacagaa 9608735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 45122167 - 45122221
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaat 55  Q
    |||||||||||| || ||||||||||||  |||||||||||| ||||||||||||    
T  45122167 tcaacctttactattttatccgatgtgagacatataactcacacttgcacacaat 45122221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 1 - 56
Target Start/End: Complemental strand, 40518630 - 40518575
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaata 56  Q
    |||||||||||||||||||| ||||||   |||||||||||| |||| ||||||||    
T  40518630 tcaacctttacttttctatctgatgtgggacatataactcacacttgaacacaata 40518575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 41632830 - 41632777
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    ||||||||||||||||||||||||||||  ||||||||| || |||||||||||    
T  41632830 tcaacctttacttttctatccgatgtgagacatataacttacacttgcacacaa 41632777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 26074256 - 26074309
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    ||||||||||||||| |||||||||||   |||||||||||| |||||||||||    
T  26074256 tcaacctttacttttttatccgatgtgtgacatataactcacacttgcacacaa 26074309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 31509671 - 31509618
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||  |||||||||||||||||||  |||||||||||| |||||||||||    
T  31509671 tcaacctccacttttctatccgatgtgagacatataactcacacttgcacacaa 31509618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 36568677 - 36568730
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    ||||| |||||||||||||||||||||   |||||||||||| |||||||||||    
T  36568677 tcaacttttacttttctatccgatgtgggacatataactcacacttgcacacaa 36568730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 54
Target Start/End: Original strand, 1028631 - 1028680
Alignment:
Q  5 cctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||||||||||||||   |||||||||||| |||| ||||||    
T  1028631 cctttacttttctatccgatgtgggacatataactcacacttgtacacaa 1028680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 12662762 - 12662815
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||| || |||||||||||   |||||||||||| |||||||||||    
T  12662762 tcaacctttactattttatccgatgtgggacatataactcacacttgcacacaa 12662815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 623866 - 623818
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgca 49  Q
    |||||||||||| || ||||||||||||  |||||||||||| ||||||    
T  623866 tcaacctttactattatatccgatgtgagacatataactcacacttgca 623818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 36; Significance: 0.00000000003; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 28301659 - 28301706
Alignment:
Q  7 tttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    ||||||||||||||||||||||  |||||||||||| |||||||||||    
T  28301659 tttacttttctatccgatgtgagacatataactcacacttgcacacaa 28301706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 16569244 - 16569191
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||| |||||||||||||||  |||||||||||| |||||| ||||    
T  16569244 tcaacctttactgttctatccgatgtgagacatataactcacacttgcatacaa 16569191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 16596418 - 16596471
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||| |||||||||||||||  |||||||||||| |||||| ||||    
T  16596418 tcaacctttactgttctatccgatgtgagacatataactcacacttgcatacaa 16596471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 43241543 - 43241490
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||| |||| ||||||||||| | |||||||||||| |||||||||||    
T  43241543 tcaacctttatttttttatccgatgtggaacatataactcacacttgcacacaa 43241490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 23487 - 23540
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||| || ||||||||||| | ||||||||||||  ||||||||||    
T  23487 tcaacctttactattgtatccgatgtggaacatataactcacaattgcacacaa 23540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 118411 - 118464
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||||||||||| ||||||   ||||||||| || |||||||||||    
T  118411 tcaacctttacttttctatctgatgtgggacatataacttacacttgcacacaa 118464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 1085726 - 1085779
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||| || |||||||||||   |||||||||||| |||||||||||    
T  1085726 tcaacctttactattttatccgatgtgggacatataactcacacttgcacacaa 1085779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 7517628 - 7517575
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||| || |||||||||||   |||||||||||| |||||||||||    
T  7517628 tcaacctttactcttttatccgatgtgggacatataactcacacttgcacacaa 7517575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 7554073 - 7554020
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||| || |||||||||||   |||||||||||| |||||||||||    
T  7554073 tcaacctttactattttatccgatgtgggacatataactcacacttgcacacaa 7554020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 8128551 - 8128604
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||| ||||||||||||| ||   |||||||||||| |||||||||||    
T  8128551 tcaacctttatttttctatccgatatgggacatataactcacacttgcacacaa 8128604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 30245125 - 30245072
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||| || ||||||||||| | |||||||||||| |||| ||||||    
T  30245125 tcaacctttactcttttatccgatgtggaacatataactcacacttgtacacaa 30245072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 36109027 - 36109080
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||| || ||||||||||||   ||||||||||| |||||||||||    
T  36109027 tcaacctttactcttttatccgatgtgagaaatataactcacacttgcacacaa 36109080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 56
Target Start/End: Complemental strand, 36623006 - 36622953
Alignment:
Q  3 aacctttacttttctatccgatgtgaagcatataactcacccttgcacacaata 56  Q
    |||||||||| || |||||||||||   |||||||||||| |||||||||||||    
T  36623006 aacctttactattttatccgatgtgggacatataactcacacttgcacacaata 36622953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 45433289 - 45433236
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||| || ||||||||||| | |||||||||||| |||| ||||||    
T  45433289 tcaacctttactcttttatccgatgtggatcatataactcacacttgtacacaa 45433236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 6 - 54
Target Start/End: Original strand, 36967344 - 36967392
Alignment:
Q  6 ctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||| ||||||||||||  |||||||||||| |||| ||||||    
T  36967344 ctttacttttttatccgatgtgagacatataactcacacttgtacacaa 36967392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 10074101 - 10074154
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    ||||| |||||||||||||||||||||    |||||||||||||||||||||||    
T  10074101 tcaacgtttacttttctatccgatgtgggatatataactcacccttgcacacaa 10074154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 3 - 54
Target Start/End: Complemental strand, 16107724 - 16107673
Alignment:
Q  3 aacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    ||||||||||||| ||||||||||||  |||||||||||| |||| ||||||    
T  16107724 aacctttacttttttatccgatgtgacacatataactcacacttgtacacaa 16107673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 2579982 - 2580035
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||| || |||||||||||   |||||||||||| |||||||||||    
T  2579982 tcaacctttactcttttatccgatgtgggacatataactcacacttgcacacaa 2580035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 10074473 - 10074526
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||||||||||||||||||   | | |||||||| |||||||||||    
T  10074473 tcaacctttacttttctatccgatgtgggacctctaactcacacttgcacacaa 10074526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 35210252 - 35210204
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgca 49  Q
    |||||||||||| || ||||||||||||  |||||||||||| ||||||    
T  35210252 tcaacctttactattttatccgatgtgagacatataactcacacttgca 35210204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 33175774 - 33175827
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||||||||||| |||||||  |||||||||||| |||| ||||||    
T  33175774 tcaacctttacttttctatctgatgtgagacatataactcacacttgtacacaa 33175827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 49336797 - 49336850
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    ||||||||||||||||||||||||||||  ||| |||||||| |||| ||||||    
T  49336797 tcaacctttacttttctatccgatgtgagacatgtaactcacacttgtacacaa 49336850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 47965034 - 47965078
Alignment:
Q  10 acttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    ||||||||||||||||| || |||||||||||| |||||||||||    
T  47965034 acttttctatccgatgtaaaacatataactcacacttgcacacaa 47965078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 7 - 54
Target Start/End: Complemental strand, 9240191 - 9240144
Alignment:
Q  7 tttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    ||||||| ||||||||||||| | |||||||||||| |||||||||||    
T  9240191 tttacttctctatccgatgtggaacatataactcacacttgcacacaa 9240144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 21832453 - 21832503
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcaca 51  Q
    ||||||||||||||||||||| |||||   |||||||||||| ||||||||    
T  21832453 tcaacctttacttttctatccaatgtgggacatataactcacacttgcaca 21832503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 12114672 - 12114725
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||||||||||||||||||    |||||||| || |||||||||||    
T  12114672 tcaacctttacttttctatccgatgtgggatatataacttacacttgcacacaa 12114725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 53577412 - 53577359
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||| || |||||||||||   |||||||||||| |||||||||||    
T  53577412 tcaacctttactgttttatccgatgtgtgacatataactcacacttgcacacaa 53577359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 12747871 - 12747915
Alignment:
Q  10 acttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    ||||||||||||||||||   |||||||||||| |||||||||||    
T  12747871 acttttctatccgatgtgggacatataactcacacttgcacacaa 12747915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 13 - 57
Target Start/End: Original strand, 39336351 - 39336395
Alignment:
Q  13 tttctatccgatgtgaagcatataactcacccttgcacacaatag 57  Q
    |||||||||||||||   |||||||||||| ||||||||||||||    
T  39336351 tttctatccgatgtgggacatataactcacacttgcacacaatag 39336395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 962646 - 962593
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||||||||||||||||||   |||||||||||| |||||| ||||    
T  962646 tcaacctttacttttctatccgatgtgggacatataactcacacttgcatacaa 962593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 28531424 - 28531477
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    ||||||||| |||||||||||||||||   |||||||||||| |||||||||||    
T  28531424 tcaacctttgcttttctatccgatgtgggacatataactcacacttgcacacaa 28531477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 15880311 - 15880258
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||| || ||||||||||| | |||||||||||| |||| ||||||    
T  15880311 tcaacctttactcttttatccgatgtggaacatataactcacacttgtacacaa 15880258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 28254347 - 28254400
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||||||||||||||||||   ||||||| |||| || ||||||||    
T  28254347 tcaacctttacttttctatccgatgtgggacatataagtcacactggcacacaa 28254400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 30313226 - 30313173
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||  |||||||||||||||||||  |||||||| ||| |||||||||||    
T  30313226 tcaacctccacttttctatccgatgtgagacatataacacacgcttgcacacaa 30313173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 31468856 - 31468909
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||| || |||||||||||   |||||||||||| |||||||||||    
T  31468856 tcaacctttactattttatccgatgtgggacatataactcacacttgcacacaa 31468909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 36785673 - 36785726
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||| || |||||||||||   |||||||||||| |||||||||||    
T  36785673 tcaacctttactattttatccgatgtgggacatataactcacacttgcacacaa 36785726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 10 - 54
Target Start/End: Original strand, 33561570 - 33561614
Alignment:
Q  10 acttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    ||||||||||| |||||| | |||||||||||| |||||||||||    
T  33561570 acttttctatctgatgtggaacatataactcacacttgcacacaa 33561614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0734 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0734
Description:

Target: scaffold0734; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 5825 - 5772
Alignment:
Q  1 tcaacctttacttttctatccgatgtgaagcatataactcacccttgcacacaa 54  Q
    |||||||||||| || |||||||||||   |||||||||||| |||||||||||    
T  5825 tcaacctttactattttatccgatgtgcgacatataactcacacttgcacacaa 5772  T

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