View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8263_low_2 (Length: 695)

Name: NF8263_low_2
Description: NF8263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8263_low_2
NF8263_low_2
[»] chr1 (6 HSPs)
chr1 (1-658)||(9804675-9805331)
chr1 (50-482)||(9817777-9818211)
chr1 (9-331)||(9806473-9806792)
chr1 (543-686)||(9817550-9817693)
chr1 (540-679)||(9817438-9817577)
chr1 (550-658)||(9817341-9817448)
[»] scaffold0432 (3 HSPs)
scaffold0432 (9-479)||(11788-12264)
scaffold0432 (536-686)||(11558-11708)
scaffold0432 (540-658)||(11467-11585)
[»] chr7 (1 HSPs)
chr7 (328-482)||(42778749-42778900)
[»] chr8 (1 HSPs)
chr8 (16-107)||(2371052-2371144)


Alignment Details
Target: chr1 (Bit Score: 549; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 549; E-Value: 0
Query Start/End: Original strand, 1 - 658
Target Start/End: Complemental strand, 9805331 - 9804675
Alignment:
Q  1 aacaggataagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgatttttgttttattcggttattaaaatatgtacttgta 100  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9805331 aacaggacaagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattttttttttattcggttattaaaatatgtacttgta 9805232  T
Q  101 tttgttatttgctatttacttctagtacacattttatcttaaatttttgtacacataaatgcatcaaagggaaaaggaattcttgttgaacaaaatgaaa 200  Q
    |||||||||| |||||||||||||||||||||||||| ||||||||||||||| |  |||||||||||||||||||||||||||||||||||||||||||    
T  9805231 tttgttattttctatttacttctagtacacattttatattaaatttttgtacataggaatgcatcaaagggaaaaggaattcttgttgaacaaaatgaaa 9805132  T
Q  201 agcaccagtgatgagcaggaagactcttccccaaaagtaagatggggaatttgaagagtataagaaatccatctgtggataataaattaaaataaaatcc 300  Q
    |||||  |||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  9805131 agcactggtgatgaggaggaagactcttccccaaaggtaagatggggaatttgaagagtataagaaatccatgtgtggataataaattaaaataaaatcc 9805032  T
Q  301 atgtatttattacatagtatgatgtttgaaaccactcacataaaagacaaccacaaattagagaaagacatgcaaaatgatcaagatnnnnnnntatatg 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||        |||||    
T  9805031 atgtatttattacatagtatgatgtttgaaaccactcacataaaagacaaccacaaatttgagaaagacatgcaaaatgatctagataaaaaaa-atatg 9804933  T
Q  401 aaaaaagtttggattaccttttttgcccaaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataaccattcatgagaggttggcaa 500  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9804932 aaaaaagtttggattacctttcttgcccaaataatgaaacgaggttgaactttcatgaaaactccatcaaaagagataaccattcatgagaggttggcaa 9804833  T
Q  501 cggcgactggtcgatgtcgatctcagtgaagtttcatggttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcg 600  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||    
T  9804832 cggcgactgatcgatgtcgatctcagtgaagtttcatggttcttttttctgatcgatgtcgatctcagtgatggtgcttggagagaggttggcaacagcg 9804733  T
Q  601 attgagggagaaaattttgtttagggtttcaagagaatgagaaatgaggatgggagga 658  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  9804732 attgagggagaaaattgtgtttagggtttcaagagaatgagaaatgaggatgggagga 9804675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 50 - 482
Target Start/End: Complemental strand, 9818211 - 9817777
Alignment:
Q  50 aaggtatattgtgattt--ttgttttattcggttattaaaatatgtacttgtatttgttatttgctatttacttctagtacacattttatcttaaatttt 147  Q
    |||||||||||||||||  || |||||| ||||||||||| |||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||    
T  9818211 aaggtatattgtgatttattttttttatacggttattaaattatgtacttgtatttgttattttctatttacttctagtacacaatttatattaaatttt 9818112  T
Q  148 tgtacacataaatgcatcaaagggaaaaggaattcttgttgaacaaaatgaaaagcaccagtgatgagcaggaagactcttccccaaaagtaagatgggg 247  Q
    ||||||||  |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |||||||||||    
T  9818111 tgtacacaagaatgcatcaaagggaaaaggaattcttgttgaacaaaatgaaaagcactagtgatgaggaggaagactcttccccaaaggtaagatgggg 9818012  T
Q  248 aatttgaagagt--ataagaaatccatctgtggataataaattaaaataaaatccatgtatttattacatagtatgatgtttgaaaccactcacataaaa 345  Q
    ||||||||||||  | ||||||||||| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||    
T  9818011 aatttgaagagtagaaaagaaatccatgtgtagataataaattaaaataaaatccatgtatttatcacatagtatgatgtttgaaatcactcacataaaa 9817912  T
Q  346 gacaaccacaaattagagaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaagtttggattaccttttttgcccaaataatgaaacgaggt 445  Q
    ||||||||||||| ||||||||||||||||||||||| ||||        || || ||||||||| ||||||||||||||||||||||||| ||||||||    
T  9817911 gacaaccacaaatcagagaaagacatgcaaaatgatctagataaaaaa--atgtggaaaaagttttgattaccttttttgcccaaataatggaacgaggt 9817814  T
Q  446 tgaagtttcatgaaaactccatcaaaagagataacca 482  Q
    |||||||||||||||| ||||||||||||||||||||    
T  9817813 tgaagtttcatgaaaattccatcaaaagagataacca 9817777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 107; E-Value: 3e-53
Query Start/End: Original strand, 9 - 331
Target Start/End: Original strand, 9806473 - 9806792
Alignment:
Q  9 aagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgatt--tttgttttattcggttattaaaatatgtacttgtatttgtt 106  Q
    |||||||||||||||||| || ||| |||||||||||||||||||||||||||||||  ||| ||||| | ||||||| |||||||||||||| ||||||    
T  9806473 aagatggaaggtatttcacgtgctcacgaaaagggagaatcaaggtatattgtgatttatttattttagttggttattcaaatatgtacttgtgtttgtt 9806572  T
Q  107 atttgctatttacttctagtacacattttatcttaaatttttgtacacataaatgcatcaaagggaaaaggaattcttgttgaacaaaatgaaaag---- 202  Q
    |||| ||||||  ||||| |||||||||||| || |||||||||||||            ||||||||||||||| ||||||||||||||||| ||        
T  9806573 attttctatttgtttctaatacacattttatatttaatttttgtacac------------aagggaaaaggaattattgttgaacaaaatgaagaggagg 9806660  T
Q  203 -caccagtgatgagcaggaagactcttccccaaaagtaagatggggaatttgaagagt---ataagaaatccatctgtggataataaattaaaataaaat 298  Q
     ||| |  || ||| ||||||||| || ||| |||||||| |||||||||||||||||   ||||||| | ||| | |    |||||| |||||||||||    
T  9806661 ccactatagaagaggaggaagactatt-cccgaaagtaaggtggggaatttgaagagtagaataagaagttcatgtctacccaataaaataaaataaaat 9806759  T
Q  299 ccatgtatttattacatagtatgatgtttgaaa 331  Q
    |||||||||||||||||||||||||||||||||    
T  9806760 ccatgtatttattacatagtatgatgtttgaaa 9806792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 96; E-Value: 1e-46
Query Start/End: Original strand, 543 - 686
Target Start/End: Complemental strand, 9817693 - 9817550
Alignment:
Q  543 ttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgaga 642  Q
    ||||||||||||||||||||||||||  ||| || |||||||||||||| ||||||||  |||||| ||||||| ||||||||||||||||| |||||||    
T  9817693 ttttttctgatcgatgtcgatctcagcaatgttggtaggagagaggttgtcaacggcggatgagggggaaaattgtgtttagggtttcaagataatgaga 9817594  T
Q  643 aatgaggatgggaggattattttgtttgattgatgtccatctca 686  Q
    |||||||||||||||||| |||||||||||||||||| ||||||    
T  9817593 aatgaggatgggaggattcttttgtttgattgatgtcgatctca 9817550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 540 - 679
Target Start/End: Complemental strand, 9817577 - 9817438
Alignment:
Q  540 ttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatg 639  Q
    ||||||| | |||| |||||||||||||   |||||| ||||||||||||||||| | |||  |||||||||||| ||||||||||||||||| ||||||    
T  9817577 ttcttttgtttgattgatgtcgatctcacctatggtggtaggagagaggttggcagcagcggctgagggagaaaactttgtttagggtttcaaaagaatg 9817478  T
Q  640 agaaatgaggatgggaggattattttgtttgattgatgtc 679  Q
    |||||||||||| |||||||| ||||| ||||| ||||||    
T  9817477 agaaatgaggattggaggattcttttgattgatcgatgtc 9817438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 550 - 658
Target Start/End: Complemental strand, 9817448 - 9817341
Alignment:
Q  550 tgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatgagaaatgagg 649  Q
    ||||||||||||||| ||| ||||||| || |||||||||||||| |||||  |||||||||||| | ||||||||||||| ||||||||||||||||||    
T  9817448 tgatcgatgtcgatc-cagcgatggtggtatgagagaggttggcagcggcggctgagggagaaaactgtgtttagggtttctagagaatgagaaatgagg 9817350  T
Q  650 atgggagga 658  Q
    |||||||||    
T  9817349 atgggagga 9817341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: scaffold0432
Description:

Target: scaffold0432; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 9 - 479
Target Start/End: Complemental strand, 12264 - 11788
Alignment:
Q  9 aagatggaaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattt-ttgttttattcggttattaaaatatgtacttgtatttgtta 107  Q
    ||||||||||||||| |||||||||  |||||||| ||||||| |||| ||||||||| || ||||| | ||||||| || ||||||||| | |||||||    
T  12264 aagatggaaggtattccatgtactcatgaaaagggggaatcaacgtattttgtgatttatttttttagttggttattcaattatgtacttatgtttgtta 12165  T
Q  108 tttgctatttacttctagtacacattttatcttaaatttttgtacacataaatgcatcaaagggaaaaggaattcttgttgaacaaaatgaaaag----- 202  Q
    |||  |||||||||||||||| |||||||| ||||||||| ||||||   |||||| | |||||| |||||||||||||||||||||||||||||         
T  12164 ttttatatttacttctagtac-cattttatattaaattttggtacacgataatgcagcgaagggagaaggaattcttgttgaacaaaatgaaaaggatgc 12066  T
Q  203 caccagtgatgagcaggaagactcttccccaaaagtaagatggggaatttgaagagta---taagaaatccatctgtggataataaattaaaataaaatc 299  Q
    ||| |||||| |  ||||||||||||||| ||| ||||||||||||||||||||||||   ||||||||| || |||  |||||||| |||||||||||     
T  12065 cactagtgataacgaggaagactcttccctaaa-gtaagatggggaatttgaagagtagaataagaaatctatgtgtacataataaaataaaataaaatt 11967  T
Q  300 catgtatttattacatagtatgatgtttgaaaccactcacataaaagacaaccacaaattagagaaagacatgcaaaatgatcaagatnnnnnnntatat 399  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||||||||||||| ||  ||||        || |    
T  11966 catgtatttattacatagtatgatgtttgaaatcactcacataaaagacaaccacaaatcagataaagacatgcaaaattatatagataaaaca--atgt 11869  T
Q  400 g-aaaaaagtttggattaccttttttgcccaaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataa 479  Q
    | |||||||||  ||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  11868 gaaaaaaagttaagattaccttttatgcccaattaatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataa 11788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 536 - 686
Target Start/End: Complemental strand, 11708 - 11558
Alignment:
Q  536 atggttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagag 635  Q
    ||||||||||||||  |||||||| |||||||| ||||||| || |||||||||||| | |||   ||||| || |||| ||||||| | | ||||||||    
T  11708 atggttcttttttccaatcgatgttgatctcagcgatggtggtatgagagaggttggtagcgggagttgagagataaaactttgttttgagattcaagag 11609  T
Q  636 aatgagaaatgaggatgggaggattattttgtttgattgatgtccatctca 686  Q
    |||| ||| |||||||||||||||| |||||||||||  ||||| ||||||    
T  11608 aatgggaagtgaggatgggaggattcttttgtttgatcaatgtcgatctca 11558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0432; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 540 - 658
Target Start/End: Complemental strand, 11585 - 11467
Alignment:
Q  540 ttcttttttctgatcgatgtcgatctcagtgatggtgctaggagagaggttggcaacggcgattgagggagaaaattttgtttagggtttcaagagaatg 639  Q
    ||||||| | ||||| ||||||||||||| | | ||| ||| ||||||||||||| || ||   ||||||||||| | ||| | || ||||| ||||||     
T  11585 ttcttttgtttgatcaatgtcgatctcagcggtagtggtagaagagaggttggcagcgacggccgagggagaaaactgtgtgtgggatttcatgagaata 11486  T
Q  640 agaaatgaggatgggagga 658  Q
    |||||||||||||||||||    
T  11485 agaaatgaggatgggagga 11467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 8e-29; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 328 - 482
Target Start/End: Original strand, 42778749 - 42778900
Alignment:
Q  328 gaaaccactcacataaaagacaaccacaaattagagaaagacatgcaaaatgatcaagatnnnnnnntatatgaaaaaagtttggattaccttttttgcc 427  Q
    ||||||||||| ||||||| ||||||||||| | |||||| | |||||||||||| ||||        || ||||||||||||||||||||||||||||     
T  42778749 gaaaccactcatataaaaggcaaccacaaatcaaagaaaggcgtgcaaaatgatctagataaagaa--atgtgaaaaaagtttggattaccttttttgct 42778846  T
Q  428 caaataatgaaacgaggttgaagtttcatgaaaactccatcaaaagagataacca 482  Q
    ||| | |||||||||||||||| || |||||||||||| ||||||||||||||||    
T  42778847 caattgatgaaacgaggttgaa-ttgcatgaaaactccgtcaaaagagataacca 42778900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 16 - 107
Target Start/End: Complemental strand, 2371144 - 2371052
Alignment:
Q  16 aaggtatttcatgtactcgcgaaaagggagaatcaaggtatattgtgattt-ttgttttattcggttattaaaatatgtacttgtatttgtta 107  Q
    |||||||| |||||||||| ||||| ||||||||||||||||||||||||| || ||||| ||| ||||| |||||| ||||| | |||||||    
T  2371144 aaggtattccatgtactcgtgaaaaaggagaatcaaggtatattgtgatttatttttttagtcgattattcaaatatatacttatgtttgtta 2371052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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