View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8263_low_4 (Length: 536)
Name: NF8263_low_4
Description: NF8263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8263_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 354; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 1 - 382
Target Start/End: Complemental strand, 31658964 - 31658583
Alignment:
| Q |
1 |
gcaaaagttatttgcattcagatataaatttggaatccattgtgtcatcaaatgactcttctatattactcagttttgataacaacattccaattaaaga |
100 |
Q |
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| T |
31658964 |
gcaaaagttatttgcattcagatataaatttggaatccattttgtcatcaaatgactcttctatattacttagttttgataacaacattccaattaaaga |
31658865 |
T |
|
| Q |
101 |
agaaaactcgtttccaccatcaccattgccatttcttgcatctacaatagaggatcctaaggaagagattcatgatgattattcttctcaaaatcaattg |
200 |
Q |
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| T |
31658864 |
agaaaactcgtttccaccatcaccattgccatttcttgcatctacaaaagaggatcctaaggaagagattcatgatgattattcttctcaaaatcaattg |
31658765 |
T |
|
| Q |
201 |
ttctcatcagataacctcatatcatgtaactttgaattttgttttgattatttgaaacatgccactatgctatcatcgattgaatcatttgaatttgaga |
300 |
Q |
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| T |
31658764 |
ttctcatcagataacctcatatcatgtaactttgaagtttattttgattatttgagacgtgccactatgctatcatcgattgaatcatttgaatttgaga |
31658665 |
T |
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| Q |
301 |
atgtttatgaccagttaggattttgatggctatggatatgtttctgtctaagtgtaaatttattttcaaagtttggcattgg |
382 |
Q |
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| T |
31658664 |
atgtttatgaccagttaggattttgatggctatggatatgtttctgtctaagtgtaaatttattttcaaagtttggcattgg |
31658583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 53 - 302
Target Start/End: Original strand, 31650298 - 31650553
Alignment:
| Q |
53 |
tgactcttctatattactcagttttgataa---caacattccaattaaagaagaaaactcgtttccaccatcacc---attgccatttcttgcatctaca |
146 |
Q |
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| T |
31650298 |
tgactcttcaatattacttagtttcgataataacaacatttcaaataaacaagaatatccatttcgaccatcaccaccattgccacttcttgcatctaca |
31650397 |
T |
|
| Q |
147 |
atagaggatcctaaggaagagattcatgatgattattcttctcaaaatcaattgttctcatcagataacctcatatcatgtaactttgaattttgttttg |
246 |
Q |
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| T |
31650398 |
aaaggagatcccaaggaagagatacatcatgatcattttcctcaaaaccaattgttctcaccggagaatctccaattatgcgattttgatgtttattttg |
31650497 |
T |
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| Q |
247 |
attatttgaaacatgccactatgctatcatcgattgaatcatttgaatttgagaat |
302 |
Q |
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| T |
31650498 |
attatttgagacatgtcagtgagtcatcatcgagtgaatctttttaatttgagaat |
31650553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 484 - 521
Target Start/End: Complemental strand, 31658558 - 31658521
Alignment:
| Q |
484 |
taatgggagatttatttgatcgtttaacttatgatgtc |
521 |
Q |
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| T |
31658558 |
taatgggagatttatttgatcgtttaacttatgatgtc |
31658521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 15 - 89
Target Start/End: Original strand, 31657268 - 31657342
Alignment:
| Q |
15 |
cattcagatataaatttggaatccattgtgtcatcaaatgactcttctatattactcagttttgataacaacatt |
89 |
Q |
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| T |
31657268 |
cattcagacataaaattggaatccattttgtgctacgatgactcttctatattacttagtttcgataacaacatt |
31657342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 125 - 169
Target Start/End: Original strand, 31657390 - 31657434
Alignment:
| Q |
125 |
attgccatttcttgcatctacaatagaggatcctaaggaagagat |
169 |
Q |
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| T |
31657390 |
attgccacttcttgcatctacaaaagaggaacccaaggaagagat |
31657434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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