View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8263_low_7 (Length: 424)

Name: NF8263_low_7
Description: NF8263
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8263_low_7
NF8263_low_7
[»] chr4 (14 HSPs)
chr4 (1-411)||(5886672-5887082)
chr4 (20-411)||(5612926-5613320)
chr4 (20-411)||(5895536-5895927)
chr4 (21-411)||(5848473-5848866)
chr4 (20-411)||(5604811-5605202)
chr4 (20-255)||(5539751-5539986)
chr4 (20-275)||(5558473-5558725)
chr4 (105-256)||(5857616-5857767)
chr4 (105-214)||(5571699-5571808)
chr4 (111-404)||(3748317-3748613)
chr4 (105-255)||(5583906-5584056)
chr4 (339-404)||(5564129-5564194)
chr4 (20-71)||(5564465-5564516)
chr4 (20-71)||(5571614-5571665)
[»] chr8 (1 HSPs)
chr8 (165-275)||(1482686-1482796)


Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 5886672 - 5887082
Alignment:
1 agaaatttacatagtttacacctttcatacaacaacatatcaattattgagaatgatgcaaatgctgatcagacaacctttcccaattttgaacgtcnnn 100  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       
5886672 agaaatttacatagtttacacctttcatacaacaacatatcaatcattgagaatgatgcaaatgctgatcagacaacctttcccaattttgaacgtcttt 5886771  T
101 nnnnggcatcctgcaacttgaaaactttccctagattcttgagaaatcaatcaacattaatcaatctagacctgtcaaataaccaaattcaaggaattct 200  Q
        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
5886772 ttttggcatcctgcaacttgaaaactttccctagattcttgagaaatcaatcaacattaatcaatctagacctgtcaaataaccaaattcaaggagttct 5886871  T
201 gcccaactggattttgacactacaagttcttcaataccttaatatttcacacaattttctcacagaaatggaaggctcttcgcaaaatattgcttccaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5886872 gcccaactggattttgacactacaagttcttcaataccttaatatttcacacaattttctcacagaaatggaaggctcttcgcaaaatattgcttccaac 5886971  T
301 cttttatatattgaccttcataacaaccacattcaaggaatacctgtttttcttgaatatcttgaatatttggattactcgaccaacaaattctctgtta 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
5886972 cttttatatattgaccttcataacaaccacattcaaggaatacctgtttttcttgaatatcttgaatatttggattactcgaccaacaaattctctgtta 5887071  T
401 tcccgcatgat 411  Q
    |||||||||||    
5887072 tcccgcatgat 5887082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 20 - 411
Target Start/End: Complemental strand, 5613320 - 5612926
Alignment:
20 acctttcatacaacaacatatcaattattgagaatgatgcaaatgctgatcagacaacctttcccaattttgaacgtcnnnnnnnggcatcctgcaactt 119  Q
    ||||||||||||||||||||||||| | |||||||||||||||||||||||||||  |||||||||||||||||  ||       ||||||||||||| |    
5613320 acctttcatacaacaacatatcaataaatgagaatgatgcaaatgctgatcagactgcctttcccaattttgaatatcttcatttggcatcctgcaacct 5613221  T
120 gaaaactttccctagattcttgagaaatcaatcaacattaatcaatctagacctgtcaaataaccaaattcaaggaattctgcccaactggattttgaca 219  Q
    ||||||||| |||| ||||||||||||||||||||||||    ||||||||||| |||   ||||||||||||||| || |||| || ||||||| || |    
5613220 gaaaacttttcctatattcttgagaaatcaatcaacattggaaaatctagacctttcagccaaccaaattcaaggagttgtgccaaattggatttggaaa 5613121  T
220 ctacaagttcttcaataccttaatatttcacacaattttctcacagaaatggaaggctcttcgcaaaatattgcttccaaccttttatatattgaccttc 319  Q
    ||||||  |||| || | |||||||||||||||||||||||||||||  ||||||| | || |||||||||| |||||||||||     |||||||||||    
5613120 ctacaaagtcttgaacagcttaatatttcacacaattttctcacagagttggaaggttgtttgcaaaatattacttccaaccttcatcttattgaccttc 5613021  T
320 ataacaaccacattcaagg---aatacctgtttttcttgaatatcttgaatatttggattactcgaccaacaaattctctgttatcccgcatgat 411  Q
    |||||||||| ||||||||   |||||||||||||  ||||| | ||  ||||||||||||||| ||||||||||||||||||||||||||||||    
5613020 ataacaaccaaattcaaggaacaatacctgttttttctgaatctattagatatttggattactcaaccaacaaattctctgttatcccgcatgat 5612926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 160; E-Value: 4e-85
Query Start/End: Original strand, 20 - 411
Target Start/End: Original strand, 5895536 - 5895927
Alignment:
20 acctttcatacaacaacatatcaattattgagaatgatgcaaatgctgatcagacaacctttcccaattttgaacgtcnnnnnnnggcatcctgcaactt 119  Q
    ||||||||||||||||||||||||| | ||||||||||||||||||||| |||||  |||||||||||||||||| ||         |||||||||||||    
5895536 acctttcatacaacaacatatcaataaatgagaatgatgcaaatgctgaccagactgcctttcccaattttgaacttctttatttatcatcctgcaactt 5895635  T
120 gaaaactttccctagattcttgagaaatcaatcaacattaatcaatctagacctgtcaaataaccaaattcaaggaattctgcccaactggattttgaca 219  Q
    |||||||||||||||||||||||||||||||||||||||  |   ||||||||| ||| |||||||||||||||||    ||||||| ||||||| || |    
5895636 gaaaactttccctagattcttgagaaatcaatcaacattgctatctctagacctttcacataaccaaattcaaggagcagtgcccaattggatttggaaa 5895735  T
220 ctacaagttcttcaataccttaatatttcacacaattttctcacagaaatggaaggctcttcgcaaaatattgcttccaaccttttatatatt-gacctt 318  Q
    |||||   ||||||| | |||||||||||||||||||||||||||||| ||||||| |||| ||||||| || ||||||    |||   |||| ||||||    
5895736 ctacagagtcttcaacaacttaatatttcacacaattttctcacagaattggaaggttctttgcaaaatcttacttcca----tttgggtattagacctt 5895831  T
319 cataacaaccacattcaagg---aatacctgtttttcttgaatatcttgaatatttggattactcgaccaacaaattctctgttatcccgcatgat 411  Q
    ||||||||||| ||||||||   |||||||||||||| ||||| | || | |||||||||||||| ||||| ||||||||||||||||| ||||||    
5895832 cataacaaccaaattcaaggaacaatacctgtttttcctgaatttattcagtatttggattactcaaccaataaattctctgttatcccacatgat 5895927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 21 - 411
Target Start/End: Original strand, 5848473 - 5848866
Alignment:
21 cctttcatacaacaacatatcaattattgagaatgatgcaaatgctgatcagacaacctttcccaattttgaacgtcnnnnnnnggcatcctgcaacttg 120  Q
    |||||||||||||||||||||||| |||||||||||||||| || |||||||||| ||||||||||  |  ||   |       ||||||||||||||||    
5848473 cctttcatacaacaacatatcaatcattgagaatgatgcaagtgttgatcagacagcctttcccaagctacaaacactatatttggcatcctgcaacttg 5848572  T
121 aaaactttccctagattcttgagaaatcaatcaacattaatcaatctagacctgtcaaataaccaaattcaaggaattctgcccaactggattttgacac 220  Q
     ||||||||||||||||| ||| |||||||||||||||     ||||| |||| |||  |||||||||||||||| |  | ||||| ||||||| || ||    
5848573 caaactttccctagattcctgaaaaatcaatcaacattgggatatctaaacctttcagctaaccaaattcaaggagtggtacccaattggatttggaaac 5848672  T
221 tacaagttctt-caataccttaatatttcacacaattttctcacagaaatggaaggctcttcgcaaaatattgcttccaaccttttatatattgaccttc 319  Q
    || ||  |||| || ||| || |||||||| ||||||||||||||||| ||||||| |||| |||||||||| ||||||||||| | |  ||||||||||    
5848673 taaaaagtctttcactac-ttgatatttcatacaattttctcacagaattggaaggttctttgcaaaatattacttccaaccttattttaattgaccttc 5848771  T
320 ataacaaccacattcaagg---aatacctgtttttcttgaatatcttgaatatttggattactcgaccaacaaattctctgttatcccgcatgat 411  Q
    ||||||||||  | |||||   | || ||||||||| ||||| | ||||||  ||||||||||| |||||||| ||||||| |||||| ||||||    
5848772 ataacaaccaactacaaggatcagtatctgtttttcctgaatctattgaatgcttggattactcaaccaacaatttctctggtatcccacatgat 5848866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 20 - 411
Target Start/End: Complemental strand, 5605202 - 5604811
Alignment:
20 acctttcatacaacaacatatcaattattgagaatgatgcaaatgctgatcagacaacctttcccaattttgaacgtcnnnnnnnggcatcctgcaactt 119  Q
    ||||||||||||||||||| ||||| | || |||||||||||||| ||||||||   ||||||||||| |  ||| |        ||||||||||||| |    
5605202 acctttcatacaacaacatgtcaatcaatgggaatgatgcaaatgttgatcagatttcctttcccaatataaaacttttatatttggcatcctgcaacat 5605103  T
120 gaaaactttccctagattcttgagaaatcaatcaacattaatcaatctagacctgtcaaataaccaaattcaaggaattctgcccaactggattttgaca 219  Q
      ||| |||||||||||||||||  |||||||||||||| ||   ||||||||| ||| ||||| | ||||||||| |  |||| || ||||||| || |    
5605102 acaaagtttccctagattcttgatgaatcaatcaacattgatatctctagacctttcagataacaacattcaaggagtagtgccgaattggatttggaaa 5605003  T
220 ctacaagttcttcaataccttaatatttcacacaattttctcacagaaatggaaggctcttcgcaaaatattgcttccaaccttttatata-ttgacctt 318  Q
    ||||||  ||||||||  |||||||||||||||||||||||||||||| ||||||| |||| ||||||| || ||||||    |||   || | ||||||    
5605002 ctacaaagtcttcaatggcttaatatttcacacaattttctcacagaattggaaggttctttgcaaaatcttacttcca----tttgggtagtagacctt 5604907  T
319 cataacaaccacattcaagga---atacctgtttttcttgaatatcttgaatatttggattactcgaccaacaaattctctgttatcccgcatgat 411  Q
    |||||||||||  | ||||||   ||||||||||||| ||||| | ||| || |||||||||||| || ||||| || ||||||||||| ||||||    
5604906 cataacaaccaactacaaggatgcatacctgtttttcctgaatctattggatttttggattactcaacaaacaatttttctgttatcccacatgat 5604811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 20 - 255
Target Start/End: Original strand, 5539751 - 5539986
Alignment:
20 acctttcatacaacaacatatcaattattgagaatgatgcaaatgctgatcagacaacctttcccaatttt-gaacgtcnnnnnnnggcatcctgcaact 118  Q
    ||||||||||||||||||||||||| | || ||||| || |||||||||||| ||  ||||| ||||| || | || ||       |||||||||||||     
5539751 acctttcatacaacaacatatcaatcaatgtgaatgttgaaaatgctgatcatacttccttttccaatattagtac-tctaatgttggcatcctgcaacc 5539849  T
119 tgaaaactttccctagattcttgagaaatcaatcaacattaatcaatctagacctgtcaaataaccaaattcaaggaattctgcccaactggattttgac 218  Q
    |||||||||||||||| |||||||||||  |||| | ||| | || ||||||||| |||||||| |||||||| ||||   ||||||||||||| | ||     
5539850 tgaaaactttccctagtttcttgagaaacaaatccagattgaacattctagacctttcaaataatcaaattcatggaacagtgcccaactggatatggaa 5539949  T
219 actacaagttcttcaataccttaatatttcacacaat 255  Q
     ||||||  ||||||| |||||||| |||| ||||||    
5539950 gctacaaaatcttcaaaaccttaatgtttctcacaat 5539986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 20 - 275
Target Start/End: Complemental strand, 5558725 - 5558473
Alignment:
20 acctttcatacaacaacatatcaattattgagaatgatgcaaatgctgatcagacaacctttcccaattttgaacgtcnnnnnnnggcatcctgcaactt 119  Q
    |||||||||| |||||||||||||| | ||  | ||||||||||| |||||| ||   ||||||||| |||  |||||       |||| ||||||||||    
5558725 acctttcatataacaacatatcaatcaatgtaagtgatgcaaatgttgatcatactttctttcccaaatttacacgtctagaattggcaacctgcaactt 5558626  T
120 gaaaactttccctagattcttgagaaatcaatcaacattaatcaatctagacctgtcaaataaccaaattcaaggaattctgcccaactggattttgaca 219  Q
    ||||||||||||||  |||||||  || ||||| |  ||| || |||||||||| |||  |||||||||||| ||| |  ||||||| ||||||| ||||    
5558625 gaaaactttccctaatttcttgatgaaccaatccatgttattccatctagacctttcagctaaccaaattcacggagtagtgcccaattggatttggaca 5558526  T
220 ctacaagttcttcaataccttaatatttcacacaattttctcacagaaatggaagg 275  Q
    ||  ||| |||| || | || |||||||| |||||||||||||| ||| |||||||    
5558525 ct--aag-tcttgaacagctgaatatttctcacaattttctcactgaattggaagg 5558473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 105 - 256
Target Start/End: Complemental strand, 5857767 - 5857616
Alignment:
105 ggcatcctgcaacttgaaaactttccctagattcttgagaaatcaatcaacattaatcaatctagacctgtcaaataaccaaattcaaggaattctgccc 204  Q
    |||||||||||||||||||||| ||||||| ||||||| ||| ||||| | ||| | || ||||||||| ||| ||||||| ||||| |||||  | ||     
5857767 ggcatcctgcaacttgaaaactatccctagtttcttgataaaccaatccagattgaccattctagacctttcagataaccagattcatggaatagtacca 5857668  T
205 aactggattttgacactacaagttcttcaataccttaatatttcacacaatt 256  Q
    || ||||||| || ||||| |  |||||||  |||||||||||| |||||||    
5857667 aattggatttggaaactaccatatcttcaagtccttaatatttctcacaatt 5857616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 105 - 214
Target Start/End: Original strand, 5571699 - 5571808
Alignment:
105 ggcatcctgcaacttgaaaactttccctagattcttgagaaatcaatcaacattaatcaatctagacctgtcaaataaccaaattcaaggaattctgccc 204  Q
    ||||||||||||| |||||||||||||||| |||||||||||  |||| | ||| | || ||||||||| ||| |||| || |||||||||||  | |||    
5571699 ggcatcctgcaacctgaaaactttccctagtttcttgagaaacaaatccagattgagcattctagacctctcacataatcagattcaaggaatagttccc 5571798  T
205 aactggattt 214  Q
    ||||||||||    
5571799 aactggattt 5571808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 111 - 404
Target Start/End: Complemental strand, 3748613 - 3748317
Alignment:
111 ctgcaacttgaaaactttccctagattcttgagaaatcaatcaacattaatcaatctagacctgtcaaataaccaaattcaaggaattctgcccaactgg 210  Q
    |||||||||||||||||| ||||| ||||||| ||| ||  ||||||| ||| | |||||||| ||| ||||||| |||||||||||  | || || |||    
3748613 ctgcaacttgaaaacttttcctagtttcttgataaaccatacaacattgatccaactagacctttcagataaccagattcaaggaatagtaccaaattgg 3748514  T
211 attttgacactacaagttcttcaataccttaatatttcacacaattttctcacagaaatggaaggctcttcgcaaaatattgcttccaaccttttatata 310  Q
     ||| || ||| | |  |||  ||   ||||||||||| |||||| |||||||  |  |||||||  ||| ||||||| |  ||||| ||     |  |     
3748513 gtttggaaactgccatatctagaagctcttaatatttctcacaatcttctcactcatttggaaggacctttgcaaaatctcacttcctactgggaaattc 3748414  T
311 ttgaccttcataacaaccacattcaagg---aatacctgtttttcttgaatatcttgaatatttggattactcgaccaacaaattctctgttatccc 404  Q
    ||||||||||||||||| |  | |||||   ||||||| |||||||| ||| | ||||||||||||||||||| ||||||||||| |||||||||||    
3748413 ttgaccttcataacaacaaactgcaaggaccaatacctttttttcttaaatctgttgaatatttggattactctaccaacaaattttctgttatccc 3748317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 105 - 255
Target Start/End: Original strand, 5583906 - 5584056
Alignment:
105 ggcatcctgcaacttgaaaactttccctagattcttgagaaatcaatcaacattaatcaatctagacctgtcaaataaccaaattcaaggaattctgccc 204  Q
    ||||||||||||| |||||||||||||||| |||||||||||  ||||    || | || ||||||||| ||| |||| || |||||||||||  | |||    
5583906 ggcatcctgcaacctgaaaactttccctagtttcttgagaaactaatcctgttttagcattctagacctctcacataatcagattcaaggaatagttccc 5584005  T
205 aactggattttgacactacaagttcttcaataccttaatatttcacacaat 255  Q
    |||||||||| ||   | |||  |||||||  |||||||||||| ||||||    
5584006 aactggatttggaggattcaaaatcttcaaagccttaatatttctcacaat 5584056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 339 - 404
Target Start/End: Complemental strand, 5564194 - 5564129
Alignment:
339 aatacctgtttttcttgaatatcttgaatatttggattactcgaccaacaaattctctgttatccc 404  Q
    |||||||| ||||||||||||| || |||||||||||| ||| |  |||||||| |||||||||||    
5564194 aatacctgcttttcttgaatatgttcaatatttggattgctcaatgaacaaattttctgttatccc 5564129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Complemental strand, 5564516 - 5564465
Alignment:
20 acctttcatacaacaacatatcaattattgagaatgatgcaaatgctgatca 71  Q
    ||||||||||||||||||||||||||| || ||||| ||| |||| ||||||    
5564516 acctttcatacaacaacatatcaattaatgggaatgttgctaatgttgatca 5564465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 20 - 71
Target Start/End: Original strand, 5571614 - 5571665
Alignment:
20 acctttcatacaacaacatatcaattattgagaatgatgcaaatgctgatca 71  Q
    ||||||||||||||||||||||||| | || ||||| || ||||||||||||    
5571614 acctttcatacaacaacatatcaatcaatgtgaatgttgaaaatgctgatca 5571665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 165 - 275
Target Start/End: Complemental strand, 1482796 - 1482686
Alignment:
165 tctagacctgtcaaataaccaaattcaaggaattctgcccaactggattttgacactacaagttcttcaataccttaatatttcacacaattttctcaca 264  Q
    ||||||||| ||| | |||||||||||||||   || || || ||||||| || |||| ||  | ||||  | |||||||||||||||||||||||||||    
1482796 tctagacctttcagagaaccaaattcaaggagcacttcctaattggatttggaaactagaaagtattcaggaacttaatatttcacacaattttctcaca 1482697  T
265 gaaatggaagg 275  Q
    ||| |||||||    
1482696 gaattggaagg 1482686  T

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