View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8264_high_1 (Length: 304)

Name: NF8264_high_1
Description: NF8264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8264_high_1
NF8264_high_1
[»] chr5 (12 HSPs)
chr5 (6-300)||(39460816-39461110)
chr5 (8-280)||(39487036-39487305)
chr5 (15-287)||(39463883-39464152)
chr5 (15-287)||(39451578-39451847)
chr5 (20-267)||(39457641-39457885)
chr5 (15-274)||(39470099-39470354)
chr5 (23-286)||(39455213-39455473)
chr5 (6-287)||(39476075-39476359)
chr5 (21-287)||(39472614-39472877)
chr5 (167-287)||(39483990-39484110)
chr5 (6-88)||(39483826-39483908)
chr5 (179-280)||(43311863-43311964)


Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 6 - 300
Target Start/End: Original strand, 39460816 - 39461110
Alignment:
Q  6 agaaagcaaatggtattatagtaaattcatttgaagagctagaatcccatgcagttcaatcctttttctctcaccctgatctagctagtttaccggttat 105  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  39460816 agaaagcaaatggtattatagtaaattcatttgaagagctagaatcccatgcagttcaatcatttttctctcaccctgatctagctagtttaccggttat 39460915  T
Q  106 ttatccggcaggacccattataaacccagagctcaaaaccaagggaacagttggttcagacgatatcatcaagtggcttgatgatcaacctctttcctcc 205  Q
    ||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  39460916 ttatccggcaggacccattataaaccctgagcccaaaaccaagggaacagttggttcagatgatatcatcaagtggcttgatgatcaacctctttcctcc 39461015  T
Q  206 gtagttttcctctgctttgggactaggggtacctgcgatgaggatcagattaaggagatcgcacatgctattgaggatagtgatgtccatctcat 300  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||  |||||| ||||    
T  39461016 gtagttttcctctgctttgggactaggggtaccttcgatgaggatcagattaaggagatcgcacatgccattgaggatagtggcgtccatttcat 39461110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 8 - 280
Target Start/End: Original strand, 39487036 - 39487305
Alignment:
Q  8 aaagcaaatggtattatagtaaattcatttgaagagctagaatcccatgcagttcaatcctttttctctcaccctgatctagctagtttaccggttattt 107  Q
    ||||||||||  |||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||||| |||||||||||    ||||||||    |    
T  39487036 aaagcaaatgccattatagtaaattcatttgaagagttagaatcacatgctgttcaatcctttttctctcatcctgatctagcagaattaccggta---t 39487132  T
Q  108 atccggcaggacccattataaacccagagctcaaaaccaagggaacagttggttcagacgatatcatcaagtggcttgatgatcaacctctttcctccgt 207  Q
    |||| |  |||||| |  ||||||| |||| |||||| ||||| || | ||  || || ||||||||||||||||||||||||||||||| |||||| ||    
T  39487133 atccagtgggacccttattaaaccccgagcccaaaactaagggcaccgatgagtctgatgatatcatcaagtggcttgatgatcaacctccttcctcggt 39487232  T
Q  208 agttttcctctgctttgggactaggggtacctgcgatgaggatcagattaaggagatcgcacatgctattgag 280  Q
    ||||||||||||||| ||||  |||||  | | ||||||||||||| |||| ||||| |||||||||||||||    
T  39487233 agttttcctctgcttcgggagcaggggctctttcgatgaggatcaggttaaagagattgcacatgctattgag 39487305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 15 - 287
Target Start/End: Complemental strand, 39464152 - 39463883
Alignment:
Q  15 atggtattatagtaaattcatttgaagagctagaatcccatgcagttcaatcctttttctctcaccctgatctagctagtttaccggttatttatccggc 114  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| || ||||| ||| |  ||  ||||||| |||||| |   || ||||| |     
T  39464152 atggttttatagtaaattcatttgaagagctagaatcccatgcagttcattcatttttatctgatactattctagctggtttacgg---atatatcctgt 39464056  T
Q  115 aggacccattataaacccagagctcaaaaccaagggaacagttggttcagacgatatcatcaagtggcttgatgatcaacctctttcctccgtagttttc 214  Q
     ||||||||  |||||||||||| |||||||||||   |  ||| ||  || ||||||||||||||||||||||||||||||| |||||| |||||||||    
T  39464055 gggacccatattaaacccagagcccaaaaccaaggaccccattgattatgatgatatcatcaagtggcttgatgatcaacctccttcctcagtagttttc 39463956  T
Q  215 ctctgctttgggactaggggtacctgcgatgaggatcagattaaggagatcgcacatgctattgaggatagtg 287  Q
    |||||||| ||||  || ||| | | |||||| |||||| |||||||||| |||| |||||||||| ||||||    
T  39463955 ctctgcttcgggagcagaggttctttcgatgaagatcaggttaaggagattgcacttgctattgagaatagtg 39463883  T

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Target: chr5; HSP #4
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 15 - 287
Target Start/End: Original strand, 39451578 - 39451847
Alignment:
Q  15 atggtattatagtaaattcatttgaagagctagaatcccatgcagttcaatcctttttctctcaccctgatctagctagtttaccggttatttatccggc 114  Q
    |||| |||||||||||||||||||||||||||||||| || || ||||| |||||||||  ||| |||||  || | ||||||||  |||| |||||||     
T  39451578 atggcattatagtaaattcatttgaagagctagaatcacacgcggttcactcctttttcaatcatcctgaattaacaagtttaccaattatatatccggt 39451677  T
Q  115 aggacccattataaacccagagctcaaaaccaagggaacagttggttcagacgatatcatcaagtggcttgatgatcaacctctttcctccgtagttttc 214  Q
    |||||| ||  |||  || |||| |||||||||||     |||||||| ||   ||||||||| ||||||||||||||||||||||| || || ||||||    
T  39451678 aggacctatattaagtcctgagcccaaaaccaaggacgttgttggttctga---tatcatcaactggcttgatgatcaacctctttcttctgttgttttc 39451774  T
Q  215 ctctgctttgggactaggggtacctgcgatgaggatcagattaaggagatcgcacatgctattgaggatagtg 287  Q
    |||||||||||||  ||||||   | ||||||||| ||| |||||||||||||||||||||||||| ||||||    
T  39451775 ctctgctttgggagcaggggttgtttcgatgaggaccaggttaaggagatcgcacatgctattgagaatagtg 39451847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 20 - 267
Target Start/End: Complemental strand, 39457885 - 39457641
Alignment:
Q  20 attatagtaaattcatttgaagagctagaatcccatgcagttcaatcctttttctctcaccctgatctagctagtttaccggttatttatccggcaggac 119  Q
    ||||| ||||||||||||||||||||||||||| |||| ||||| |||||| ||||||| |||||||||||  |||||||    || ||||||| |||||    
T  39457885 attattgtaaattcatttgaagagctagaatcctatgccgttcactcctttgtctctcatcctgatctagcaggtttacc---catatatccggtaggac 39457789  T
Q  120 ccattataaacccagagctcaaaaccaagggaacagttggttcagacgatatcatcaagtggcttgatgatcaacctctttcctccgtagttttcctctg 219  Q
    | ||  |||||||  ||| |||||||||| |  |  ||| ||| ||||||||  |||||||||||||||||||||||| |||||| | ||||||||||||    
T  39457788 caatattaaaccccaagcccaaaaccaagagcgccattgattctgacgatattgtcaagtggcttgatgatcaacctccttcctcggaagttttcctctg 39457689  T
Q  220 ctttgggactaggggtacctgcgatgaggatcagattaaggagatcgc 267  Q
    ||| ||||  |||||    | ||||||||||||| |||||||||||||    
T  39457688 cttcgggagcagggggtttttcgatgaggatcaggttaaggagatcgc 39457641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 15 - 274
Target Start/End: Complemental strand, 39470354 - 39470099
Alignment:
Q  15 atggtattatagtaaattcatttgaagagctagaatcccatgcagttcaatcctttttctctcaccctgatctagctagtttaccggttatttatccggc 114  Q
    |||| ||||| || |||||||||||||||||||||||| |||| ||||| |||||||||||||| || || |||||| ||||| |    || |||||       
T  39470354 atggcattattgtcaattcatttgaagagctagaatcctatgcggttcactcctttttctctcatcccgaactagctggtttatcc---atatatccaat 39470258  T
Q  115 aggacccattataaacccagagctcaaaaccaagggaacagttggttcagacgatatcatcaagtggcttgatgatcaacctctttcctccgtagttttc 214  Q
    |||||||||  |||||| ||||| |||||||||||| || |||| ||| ||||||||  ||||||||||||||||||| |||| |||||| |||||||||    
T  39470257 aggacccatattaaacctagagcccaaaaccaagggcaccgttgattctgacgatattgtcaagtggcttgatgatcagcctccttcctcggtagttttc 39470158  T
Q  215 ctctgctttgggactaggggtacctgcgatgaggatcagattaaggagatcgcacatgct 274  Q
    |||||||| ||||  | ||||   | ||||||||||||| |||||| |||||||| ||||    
T  39470157 ctctgcttcgggagca-gggttttttcgatgaggatcaggttaaggggatcgcacttgct 39470099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 23 - 286
Target Start/End: Original strand, 39455213 - 39455473
Alignment:
Q  23 atagtaaattcatttgaagagctagaatcccatgcagttcaatcctttttctctcaccctgatctagctagtttaccggttatttatccggcaggaccca 122  Q
    |||||||||||||||||||| || ||||| ||||| ||||| |||||||||||||| |||||  || | ||||||||  |||| ||||||| |||||| |    
T  39455213 atagtaaattcatttgaagatcttgaatctcatgcggttcactcctttttctctcatcctgaattaacaagtttaccaattatatatccggtaggaccta 39455312  T
Q  123 ttataaacccagagctcaaaaccaagggaacagttggttcagacgatatcatcaagtggcttgatgatcaacctctttcctccgtagttttcctctgctt 222  Q
    |  |||  || |||| |||||||||||  |  ||||||||    ||||||||||||||||||||||||||||||||||||||||| |||||||| |||||    
T  39455313 tattaagtcctgagcccaaaaccaaggacattgttggttc---tgatatcatcaagtggcttgatgatcaacctctttcctccgtcgttttcctttgctt 39455409  T
Q  223 tgggactaggggtacctgcgatgaggatcagattaaggagatcgcacatgctattgaggatagt 286  Q
     || |  |  |||   |  |||||||||||| ||||||||||||||  |||||||||| |||||    
T  39455410 cggaagcaaaggttgttttgatgaggatcaggttaaggagatcgcatgtgctattgagaatagt 39455473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 6 - 287
Target Start/End: Original strand, 39476075 - 39476359
Alignment:
Q  6 agaaagcaaatggtattatagtaaattcatttgaagagctagaatcccatgcagttcaatcctttttctctcaccctgatctagctagtttaccggttat 105  Q
    |||||| |||||| ||||||||||| |||||||||||||||||||| ||||| ||||| || ||||||||||| ||||||||| |   | ||| |   ||    
T  39476075 agaaagtaaatggcattatagtaaactcatttgaagagctagaatcacatgcggttcactcttttttctctcatcctgatctatcggatatactg---at 39476171  T
Q  106 ttatccggcaggacccattataaacccagagctcaaaaccaagggaacagttgg------ttcagacgatatcatcaagtggcttgatgatcaacctctt 199  Q
     |||||||  |||||  |  ||||||  |||| |||||| ||||| || ||||       ||| || ||| | || |||||||||||||||||||||| |    
T  39476172 atatccggtgggacctttattaaaccttgagcccaaaacaaagggcactgttgacgctgattctgatgatgtaatgaagtggcttgatgatcaacctcct 39476271  T
Q  200 tcctccgtagttttcctctgctttgggactaggggtacctgcgatgaggatcagattaaggagatcgcacatgctattgaggatagtg 287  Q
    ||||||||||||||||||||||| |||| |||||||   |  ||||| |||||| |||||||||||||||||||| ||||| ||||||    
T  39476272 tcctccgtagttttcctctgcttcgggagtaggggttattttgatgaagatcaggttaaggagatcgcacatgctgttgagaatagtg 39476359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 21 - 287
Target Start/End: Original strand, 39472614 - 39472877
Alignment:
Q  21 ttatagtaaattcatttgaagagctagaatcccatgcagttcaatcctttttctctcaccctgatctagctagtttaccggttatttatccggcaggacc 120  Q
    |||||||||||||||||||||||||||||||||| |||||||| ||  |||  ||| | |||| || |||| |||||||   ||| ||||||| ||| ||    
T  39472614 ttatagtaaattcatttgaagagctagaatcccacgcagttcactcgatttcatctgatcctggtccagctggtttacc---tatatatccggtagggcc 39472710  T
Q  121 cattataaacccagagctcaaaaccaagggaacagttggttcagacgatatcatcaagtggcttgatgatcaacctctttcctccgtagttttcctctgc 220  Q
    |||  | ||||  |||| |||||||||||| || |||| ||| || || |||||||||||||||||||||||||||   ||||| |||||||||||||||    
T  39472711 catactgaacctggagcccaaaaccaagggcaccgttgattccgatgacatcatcaagtggcttgatgatcaacctgcatcctcagtagttttcctctgc 39472810  T
Q  221 tttgggactaggggtacctgcgatgaggatcagattaaggagatcgcacatgctattgaggatagtg 287  Q
    || || | || |||| | | ||| ||||||||| ||| | |||| |||   ||||||||| ||||||    
T  39472811 ttcggaagtatgggttctttcgacgaggatcaggttacgcagattgcatgcgctattgagaatagtg 39472877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 167 - 287
Target Start/End: Original strand, 39483990 - 39484110
Alignment:
Q  167 gatatcatcaagtggcttgatgatcaacctctttcctccgtagttttcctctgctttgggactaggggtacctgcgatgaggatcagattaaggagatcg 266  Q
    ||||| || ||||||||| || ||||||||| ||||||||||||||||||||||||||||| |||||||   |  ||||| |||||| ||||||||||||    
T  39483990 gatataatgaagtggcttcataatcaacctccttcctccgtagttttcctctgctttgggagtaggggttattttgatgaagatcaggttaaggagatcg 39484089  T
Q  267 cacatgctattgaggatagtg 287  Q
    |||||| | ||||| ||||||    
T  39484090 cacatgttgttgagaatagtg 39484110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 6 - 88
Target Start/End: Original strand, 39483826 - 39483908
Alignment:
Q  6 agaaagcaaatggtattatagtaaattcatttgaagagctagaatcccatgcagttcaatcctttttctctcaccctgatcta 88  Q
    |||||| |||||| |||||||||||||||||| ||||||||||||| || || ||||| || |||||| |||| || ||||||    
T  39483826 agaaagtaaatggcattatagtaaattcattttaagagctagaatctcacgcggttcactcttttttcactcatccagatcta 39483908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 179 - 280
Target Start/End: Complemental strand, 43311964 - 43311863
Alignment:
Q  179 tggcttgatgatcaacctctttcctccgtagttttcctctgctttgggactaggggtacctgcgatgaggatcagattaaggagatcgcacatgctattg 278  Q
    ||||| ||||| ||||||||||| ||||||||||  || ||||||||||  | |||| | | |||||||||||| |||| |||||| ||  |||||||||    
T  43311964 tggctcgatgaccaacctctttcgtccgtagtttatctttgctttgggagcaagggttctttcgatgaggatcaaattagggagattgcgtatgctattg 43311865  T
Q  279 ag 280  Q
    ||    
T  43311864 ag 43311863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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