View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8264_high_3 (Length: 246)

Name: NF8264_high_3
Description: NF8264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8264_high_3
NF8264_high_3
[»] chr5 (7 HSPs)
chr5 (14-140)||(10290210-10290336)
chr5 (147-246)||(10290056-10290155)
chr5 (14-81)||(10298669-10298736)
chr5 (24-140)||(9747055-9747171)
chr5 (82-140)||(10298467-10298525)
chr5 (159-246)||(9747370-9747454)
chr5 (150-246)||(10298177-10298270)
[»] chr8 (1 HSPs)
chr8 (159-246)||(37743885-37743971)
[»] chr2 (2 HSPs)
chr2 (159-246)||(34694433-34694519)
chr2 (159-246)||(34716845-34716931)


Alignment Details
Target: chr5 (Bit Score: 123; Significance: 3e-63; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 14 - 140
Target Start/End: Complemental strand, 10290336 - 10290210
Alignment:
Q  14 gacatcaaaatggtccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactccctccaatcctcattcctttttaaatgtcgctt 113  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10290336 gacatcaaaatgctccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactccctccaatcctcattcctttttaaatgtcgctt 10290237  T
Q  114 ctgcataagaattcgttcatatttatt 140  Q
    |||||||||||||||||||||||||||    
T  10290236 ctgcataagaattcgttcatatttatt 10290210  T

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Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 147 - 246
Target Start/End: Complemental strand, 10290155 - 10290056
Alignment:
Q  147 tactatttttgcctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaact 246  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10290155 tactatttttgcctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaact 10290056  T

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Target: chr5; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 10298736 - 10298669
Alignment:
Q  14 gacatcaaaatggtccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactcc 81  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10298736 gacatcaaaatggtccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactcc 10298669  T

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Target: chr5; HSP #4
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 24 - 140
Target Start/End: Original strand, 9747055 - 9747171
Alignment:
Q  24 tggtccaacagttcttatgaacgacggtggtgagagacatgtaagtgcatcatactccctccaatcctcattcctttttaaatgtcgcttctgcataaga 123  Q
    |||||||||||| ||| ||||||||||||||||||||||||||||| |||||||||||||||| | |||||||||||| ||   ||  ||||||| ||||    
T  9747055 tggtccaacagtccttgtgaacgacggtggtgagagacatgtaagttcatcatactccctccattactcattccttttcaaccctcatttctgcagaaga 9747154  T
Q  124 attcgttcatatttatt 140  Q
    ||||||||||| |||||    
T  9747155 attcgttcatacttatt 9747171  T

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Target: chr5; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 82 - 140
Target Start/End: Complemental strand, 10298525 - 10298467
Alignment:
Q  82 ctccaatcctcattcctttttaaatgtcgcttctgcataagaattcgttcatatttatt 140  Q
    ||||||||||||||||||||||| ||||||||||||| |||||||| ||||||||||||    
T  10298525 ctccaatcctcattcctttttaagtgtcgcttctgcagaagaattctttcatatttatt 10298467  T

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Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 159 - 246
Target Start/End: Original strand, 9747370 - 9747454
Alignment:
Q  159 ctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaact 246  Q
    |||||| |||||| |||||||||||||||| |||||   |||||||||   |||||||||||||||||| ||||||||||||||||||    
T  9747370 ctgttgcccatgacgacctttatatttcattcagag---ttgtataaaaaatcatttgattttctgctatatgctctttaggagaact 9747454  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 150 - 246
Target Start/End: Complemental strand, 10298270 - 10298177
Alignment:
Q  150 tatttttgcctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaact 246  Q
    ||||||| ||||||||| |||||||||||| ||||||  ||| |   ||||||||||   |||||||||||||||||| ||||||||| ||||||||    
T  10298270 tatttttacctgttgactatgatgacctttttatttcgaacaaa---gttgtataaaaaatcatttgattttctgctatatgctcttttggagaact 10298177  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 246
Target Start/End: Original strand, 37743885 - 37743971
Alignment:
Q  159 ctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaact 246  Q
    |||||||||||||||||||| ||||||||| ||||| |||   | |||   |||||||||||||||||  ||||||||||||||||||    
T  37743885 ctgttgaccatgatgaccttcatatttcattcagagttgtaagaaaaaaa-tcatttgattttctgctttatgctctttaggagaact 37743971  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 246
Target Start/End: Complemental strand, 34694519 - 34694433
Alignment:
Q  159 ctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaact 246  Q
    |||||||||||||||||||| ||||||||| ||||| |||   | |||   |||||||||||||||||  ||||||||||||||||||    
T  34694519 ctgttgaccatgatgaccttcatatttcattcagagttgtaagaaaaaaa-tcatttgattttctgctttatgctctttaggagaact 34694433  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 159 - 246
Target Start/End: Complemental strand, 34716931 - 34716845
Alignment:
Q  159 ctgttgaccatgatgacctttatatttcatacagaggtgttgtataaacggtcatttgattttctgctacatgctctttaggagaact 246  Q
    |||||||||||||||||||| ||||||||| ||||| |||   | |||   |||||||||||||||||  ||||||||||||||||||    
T  34716931 ctgttgaccatgatgaccttcatatttcattcagagttgtaagaaaaaaa-tcatttgattttctgctttatgctctttaggagaact 34716845  T

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