View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8264_high_5 (Length: 230)
Name: NF8264_high_5
Description: NF8264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8264_high_5 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 47383249 - 47383022
Alignment:
| Q |
1 |
ccactctctccctaaatctctctgtcactgagagctcaatctctttggttttcagtctctcgaacacctccttcagcattatatcagctatctccttaac |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47383249 |
ccactctctccctaaatctctctgtcactgagagctcaatctctttggttttcagtctctcgaacacctccttcagcattatatcagctatctccttaac |
47383150 |
T |
|
| Q |
101 |
ctccagttttgtaagttgcctgaaaacaatcatttcatccagcctattcaagaactctggcctaaagtattgcttcagctcctcggtcaccaagcttttg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
47383149 |
ctccagttttgtaagttgcctgaaaacaatcatttcatccagcctattcaagaactctggcctaaagtattgcttcagctcctcggtcaccaagcttttg |
47383050 |
T |
|
| Q |
201 |
attcggttataactgatgtccatctcat |
228 |
Q |
| |
|
||||||||||||||| ||||| |||||| |
|
|
| T |
47383049 |
attcggttataactgctgtccttctcat |
47383022 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 47818322 - 47818087
Alignment:
| Q |
1 |
ccactctctccctaaatctctctgtcactgagagctcaatctctttggttttcagtctctcgaacacctccttcagca-ttatatcagctatctcct--- |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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|
| T |
47818322 |
ccactctctccctaaatctctctgtcactgaaagctcaatctctttggttttcagtctctcgaacacctccttaagcaattatatcagctatctcctaac |
47818223 |
T |
|
| Q |
97 |
----taacctccagttttgtaagttgcctgaaaacaatcatttcatccagcctattcaagaactctggcctaaagtattgcttcagctcctcggtcacca |
192 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
47818222 |
tccttagcctccagttttgtaagttgcctgaaaacaatcatttcatccagcctattcaagaactctggcctaaagtattgcttcagctcctcgatcacca |
47818123 |
T |
|
| Q |
193 |
agcttttgattcggttataactgatgtccatctcat |
228 |
Q |
| |
|
||||||||||||||||||||||| ||||| |||||| |
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| T |
47818122 |
agcttttgattcggttataactgttgtccttctcat |
47818087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 9 - 215
Target Start/End: Complemental strand, 45116190 - 45115984
Alignment:
| Q |
9 |
tccctaaatctctctgtcactgagagctcaatctctttggttttcagtctctcgaacacctccttcagcattatatcagctatctccttaacctccagtt |
108 |
Q |
| |
|
||||||||||| ||||| ||| || ||||| |||||| | |||||||||| ||||| ||| | |||||||| || ||||| ||||| ||||||| || |
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|
| T |
45116190 |
tccctaaatctttctgttacttgaagttcaatttctttgttcttcagtctctgaaacacttccctgagcattatgtctgctatttccttcacctccaatt |
45116091 |
T |
|
| Q |
109 |
ttgtaagttgcctgaaaacaatcatttcatccagcctattcaagaactctggcctaaagtattgcttcagctcctcggtcaccaagcttttgattcggtt |
208 |
Q |
| |
|
|||| |||||||||||||||||||||||||||| |||||| || ||||||||||| |||||||| || || || || |||||||| || ||||||| || |
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|
| T |
45116090 |
ttgtgagttgcctgaaaacaatcatttcatccaacctatttaaaaactctggcctgaagtattgttttagttcttcagtcaccaaactcttgattctatt |
45115991 |
T |
|
| Q |
209 |
ataactg |
215 |
Q |
| |
|
||||||| |
|
|
| T |
45115990 |
ataactg |
45115984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 188; Significance: 1e-102; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 228
Target Start/End: Complemental strand, 40245963 - 40245736
Alignment:
| Q |
1 |
ccactctctccctaaatctctctgtcactgagagctcaatctctttggttttcagtctctcgaacacctccttcagcattatatcagctatctccttaac |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
40245963 |
ccactctctccctaaatctctctgtcactgagagctcaatctctttggttttcagtctctcgaacacctccttcagcattatatctgctatctccttaac |
40245864 |
T |
|
| Q |
101 |
ctccagttttgtaagttgcctgaaaacaatcatttcatccagcctattcaagaactctggcctaaagtattgcttcagctcctcggtcaccaagcttttg |
200 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||||||||||| ||| |
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|
| T |
40245863 |
ctccagtttagtgagttgcctgaaaacaatcatttcatcaagcctattcaagaactctggcctaaagtattgtttcagctcttcggtcaccaagctcttg |
40245764 |
T |
|
| Q |
201 |
attcggttataactgatgtccatctcat |
228 |
Q |
| |
|
|||| |||||||||| ||||| |||||| |
|
|
| T |
40245763 |
attctgttataactgctgtccttctcat |
40245736 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 5e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 3 - 221
Target Start/End: Original strand, 34054753 - 34054964
Alignment:
| Q |
3 |
actctctccctaaatctctctgtcactgagagctcaatctctttggttttcagtctctcgaacacctccttcagcattatatcagctatctccttaacct |
102 |
Q |
| |
|
||||||| |||||||||||||||||| || |||||||||||| | ||||||| |||| |||| ||||||||||||||| | |||||| |||||| | |
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|
| T |
34054753 |
actctcttcctaaatctctctgtcaccgaaagctcaatctctc-gactttcagtttctctgacacttccttcagcattatacaaactatctacttaacat |
34054851 |
T |
|
| Q |
103 |
ccagttttgtaagttgcctgaaaacaatcatttcatccagcctattcaagaactctggcctaaagtattgcttcagctcctcggtcaccaagcttttgat |
202 |
Q |
| |
|
|||||| |||||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||| |
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|
| T |
34054852 |
ccagttatgtaagttgcct-----cgataatttcatccagcctattcaagaactctggcctaaagtattgcttca-ctcctcggtcgccaagcttttgat |
34054945 |
T |
|
| Q |
203 |
tcggttataactgatgtcc |
221 |
Q |
| |
|
| ||||||||||| ||||| |
|
|
| T |
34054946 |
ttggttataactgttgtcc |
34054964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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