View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8264_low_1 (Length: 346)
Name: NF8264_low_1
Description: NF8264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8264_low_1 |
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| [»] scaffold0572 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 294; Significance: 1e-165; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 31 - 336
Target Start/End: Complemental strand, 31992314 - 31992009
Alignment:
| Q |
31 |
gaactaatataagataaaagaataaatcatgatatgaaaatcgatcagattttagttgttcaatttgcttatcagaataaagtgcagatcagaatgacac |
130 |
Q |
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| T |
31992314 |
gaactaatataagataaaagaataaatcatgatatgaaaatcgatcagattttagttgttcaatttgcttatcagaataaagtgcagatcagaatgacac |
31992215 |
T |
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| Q |
131 |
ttgcattaaaatatgacaattatcttaaaactaattaatattgttctttctaattgttcattttttccaatgtatggttgttggttaaagaataaatagt |
230 |
Q |
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| T |
31992214 |
ttgcattaaaatatgacaattatcttaaaactaattaatattgttctttctaattgttcattttttccaatgtatggttgttggttaaagaataaatagt |
31992115 |
T |
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| Q |
231 |
gcaccgataaatgcatttggaagatgacagtgagatgaatataatcatgggacactccaatattgtctttaattttctgttgtacgcgtaaaactaccag |
330 |
Q |
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| T |
31992114 |
gcaccgataaatgcatttggaagatgacagcgagatgaatataatcatgggacactcaaatattgtctttaattttctgttgtaagcgtaaaactaccag |
31992015 |
T |
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| Q |
331 |
caccac |
336 |
Q |
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|||||| |
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| T |
31992014 |
caccac |
31992009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 20971532 - 20971465
Alignment:
| Q |
33 |
actaatataagataaaagaataaatcatgatatgaaaatcgatcagattttagttgttcaatttgctt |
100 |
Q |
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| T |
20971532 |
actaatatttgataaaataataaatcatgatatgataattgatcagattttagttgttcaatttgctt |
20971465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 46 - 100
Target Start/End: Complemental strand, 20974098 - 20974044
Alignment:
| Q |
46 |
aaaagaataaatcatgatatgaaaatcgatcagattttagttgttcaatttgctt |
100 |
Q |
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| T |
20974098 |
aaaagaataaatcaagatatgaaaatcgatcagaatttagttgctcaatttgctt |
20974044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 41405130 - 41405063
Alignment:
| Q |
33 |
actaatataagataaaagaataaatcatgatatgaaaatcgatcagattttagttgttcaatttgctt |
100 |
Q |
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| T |
41405130 |
actaatatttgataaaataataaatcatgatatgaaaattgataagattttagttgttcaatttgctt |
41405063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0572 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0572
Description:
Target: scaffold0572; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 33 - 100
Target Start/End: Complemental strand, 7382 - 7315
Alignment:
| Q |
33 |
actaatataagataaaagaataaatcatgatatgaaaatcgatcagattttagttgttcaatttgctt |
100 |
Q |
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| T |
7382 |
actaatatttgataaaataatagatcatgatatgaaaattgataagattttagttgttcaatttgctt |
7315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 135 - 206
Target Start/End: Original strand, 1118560 - 1118630
Alignment:
| Q |
135 |
attaaaatatgacaattatcttaaaactaattaatattgttctttctaattgttcattttttccaatgtatg |
206 |
Q |
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| T |
1118560 |
attaaaatatgacact-attttaaaactaattaatattgtgccttctaattttccattttttccaatgtatg |
1118630 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 112 - 182
Target Start/End: Original strand, 5768694 - 5768763
Alignment:
| Q |
112 |
gtgcagatcagaatgacacttgcattaaaatatgacaattatcttaaaactaattaatattgttctttcta |
182 |
Q |
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| T |
5768694 |
gtgcagagcaaaatgacacttaaattaaaataagacgatact-ttaaaactaattaatattgttctttcta |
5768763 |
T |
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