View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8264_low_3 (Length: 281)
Name: NF8264_low_3
Description: NF8264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8264_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 120; Significance: 2e-61; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 133 - 264
Target Start/End: Original strand, 10010293 - 10010424
Alignment:
| Q |
133 |
ggacataaactatactaatttaagctcaaatcaatttgatagcaatatattttaccggattctattcaacctatataaggacaaaaataaaagcaataac |
232 |
Q |
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| T |
10010293 |
ggacataaactatactaatttaagctcaaatcaatttgacagcaatatattttaccggattctattcaacctatataaggataaaaataaaagcaattac |
10010392 |
T |
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| Q |
233 |
cgtgcatcctatgtaactaaaattgttaattg |
264 |
Q |
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| T |
10010393 |
cgtgcatcctatgtaactaaaattgttaattg |
10010424 |
T |
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Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 44 - 106
Target Start/End: Original strand, 10010206 - 10010268
Alignment:
| Q |
44 |
gtcttcattccaaaattactccaagaacaccaagctacctgtagcagagcgagaagacaattt |
106 |
Q |
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| T |
10010206 |
gtcttcattccaaaattactccaagaacaccaagctacctgtagcagagcgagaagacaattt |
10010268 |
T |
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