View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8264_low_6 (Length: 238)
Name: NF8264_low_6
Description: NF8264
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8264_low_6 |
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| [»] chr3 (3 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 7 - 238
Target Start/End: Complemental strand, 47383508 - 47383277
Alignment:
| Q |
7 |
acatcaacagctaaacagactatggctcttaaaacaagtacacaatattacactggaagagactctggcaatgaatttggagcaccactactaccattga |
106 |
Q |
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| T |
47383508 |
acatcaacagctaaacagactatggctcttaaaacaagtacacaatattacacaggaagagactctggcaatgaatttggagcaccactactaccattga |
47383409 |
T |
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| Q |
107 |
gcacaatcacatttccatcggaatcagcatccactataacagagtcaccctctttaatctctctagcaagcatcttctcagccatgctgtcttccaaaag |
206 |
Q |
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| T |
47383408 |
gcacaatcacatttccatcggaatcagcatccactataacagagtcaccctctttaatctctctagcaagcatcttctcagccatgttgtcttccaaaag |
47383309 |
T |
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| Q |
207 |
tcgcattatagctcttcttagaggtctggcac |
238 |
Q |
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| T |
47383308 |
tcgcattatagctcttcttagaggtctggcac |
47383277 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 62 - 238
Target Start/End: Complemental strand, 47818524 - 47818350
Alignment:
| Q |
62 |
gaagagactctggcaatgaatttggagcaccactactaccattgagcacaatcacatttccatcggaatcagcatccactataacagagtcaccctcttt |
161 |
Q |
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| T |
47818524 |
gaagagcctctggcaatgaatttgcagcaccactactaccattgagcacaatcacatttccatcagaatcagcatccactataa--gagtcgccctcttt |
47818427 |
T |
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| Q |
162 |
aatctctctagcaagcatcttctcagccatgctgtcttccaaaagtcgcattatagctcttcttagaggtctggcac |
238 |
Q |
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| T |
47818426 |
aatctctctagcaagcatcttctcagccatgatgtcttccaaaagttgcattatagctcttcttagaggtctggcac |
47818350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 98 - 236
Target Start/End: Complemental strand, 45116366 - 45116228
Alignment:
| Q |
98 |
taccattgagcacaatcacatttccatcggaatcagcatccactataacagagtcaccctctttaatctctctagcaagcatcttctcagccatgctgtc |
197 |
Q |
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| T |
45116366 |
taccattgagaacaatcacattaccctcggaatcaacatccactattacggagtcaccctctttgatctctctggcgagcatcttctcagccatgctatc |
45116267 |
T |
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| Q |
198 |
ttccaaaagtcgcattatagctcttcttagaggtctggc |
236 |
Q |
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| T |
45116266 |
ctccaaaagtcgcatgatggctcttcttagaggcctggc |
45116228 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 51 - 236
Target Start/End: Complemental strand, 40246178 - 40245993
Alignment:
| Q |
51 |
atattacactggaagagactctggcaatgaatttggagcaccactactaccattgagcacaatcacatttccatcggaatcagcatccactataacagag |
150 |
Q |
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| T |
40246178 |
atattacacaggaagagcatctggcaatgaatctggagcaccagtactaccgttgagtacaatcacgtttccatcagaatcagcatccactataacagag |
40246079 |
T |
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| Q |
151 |
tcaccctctttaatctctctagcaagcatcttctcagccatgctgtcttccaaaagtcgcattatagctcttcttagaggtctggc |
236 |
Q |
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| T |
40246078 |
tcgccctctttaatctccctagcaagcatcttttcagccatgctgtcctccaaaagtcgcattatggctcgtcttagaggcctggc |
40245993 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 40246238 - 40246195
Alignment:
| Q |
8 |
catcaacagctaaacagactatggctcttaaaacaagtacacaa |
51 |
Q |
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| T |
40246238 |
catcaacaacaaaacagactatggctcttaaaacaagtacacaa |
40246195 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 73 - 167
Target Start/End: Original strand, 34054593 - 34054687
Alignment:
| Q |
73 |
ggcaatgaatttggagcaccactactaccattgagcacaatcacatttccatcggaatcagcatccactataacagagtcaccctctttaatctc |
167 |
Q |
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| T |
34054593 |
ggcaatgaatctggagcaccactactaccattgagcacaataacatttccatcagaatcagcatccactataacagagtcaccctctttaatctc |
34054687 |
T |
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