View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8265_high_1 (Length: 746)
Name: NF8265_high_1
Description: NF8265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8265_high_1 |
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Alignment Details
Target: chr8 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 161 - 468
Target Start/End: Original strand, 1116320 - 1116631
Alignment:
| Q |
161 |
attcaagcacgtgcaatctcaattcagtaagtttggggaagttaaataagttgctaagggtattttgggaaatatatttaaagattttgagtttgaggtt |
260 |
Q |
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| T |
1116320 |
attcaagcagctgcaatctcaattcagtaagtttggggaagttaaataagttgctaagggtattttgggaaatatatttaaagattttgagtttgaggtt |
1116419 |
T |
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| Q |
261 |
gtacctaggaaacacaaacatg----agtgtgtgttttttgacgtgcaaaaaggttaaaaaagcattacaaaatcctgttcctatctctgttgtggattg |
356 |
Q |
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| T |
1116420 |
gtacctaggaaacacaaacatacataagtgtttgttttttgacgtggaaaaaggttaaaaaagcattacaaaatcctgttcctatctctgttgtggattg |
1116519 |
T |
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| Q |
357 |
aggaaggatgatgggtgctatcagtatcatggctttaccactcgtcatctccgttttcaaacctctctcaaccaccacccccctccactctacacttcta |
456 |
Q |
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| T |
1116520 |
aggaaggatgatgggtgctatcagtatcatggctttaccactcgtcatctccgttttcaaacctctctcaaccaccacccccctccactctacacttcta |
1116619 |
T |
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| Q |
457 |
cgccgccgctgt |
468 |
Q |
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| T |
1116620 |
cgccgccgctgt |
1116631 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 20 - 169
Target Start/End: Original strand, 1114521 - 1114676
Alignment:
| Q |
20 |
tgtaaactaaatttaagcacatttacataaacttacttcatgtaccacttatacattctagatttctagatggtactcaaactcaattcaagtacattta |
119 |
Q |
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| T |
1114521 |
tgtagactaagtttaaacacatttacataaacttacttcatgtaccacttatacattctagatttctagatggtactcaaactcaattcaagtacattta |
1114620 |
T |
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| Q |
120 |
cctcatttgt------aaaaaagaaaatgtatatttacttaaatccaattcaagca |
169 |
Q |
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| T |
1114621 |
cctcatttgtaaaaaaaaaaaaaaaaaagtatatttacctaaatccaattcaagca |
1114676 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 174; Significance: 3e-93; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 556 - 737
Target Start/End: Complemental strand, 29953185 - 29953004
Alignment:
| Q |
556 |
atcgttgcataatgcatttcagtttctctcttactttcttccctatttcagggatctagaaccttcattcattcatacttaactcacctgcattgcttac |
655 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29953185 |
atcgttgcataatgcatttcagtttctctcttactttcttccctatttcagggatctagaaccttcattcattcatacttaactcacctgcattgcttac |
29953086 |
T |
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| Q |
656 |
tacttcttcttacaggtttttcaatttccgaaccttatcaagcttcacaaaatgtctacaacttcatttttcatcttcatct |
737 |
Q |
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| T |
29953085 |
tacttcttcttacaggttttttaatttccgaaccttatcaagcttcactaaatgtctacaacttcatttttcatcttcatct |
29953004 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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