View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8265_low_2 (Length: 503)

Name: NF8265_low_2
Description: NF8265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8265_low_2
NF8265_low_2
[»] chr6 (15 HSPs)
chr6 (162-291)||(26852492-26852623)
chr6 (162-276)||(27703108-27703224)
chr6 (87-150)||(27079069-27079132)
chr6 (452-493)||(13105135-13105176)
chr6 (103-164)||(26852408-26852469)
chr6 (452-491)||(18765619-18765658)
chr6 (73-148)||(26059616-26059691)
chr6 (73-148)||(26079586-26079661)
chr6 (83-149)||(25077832-25077897)
chr6 (73-130)||(25486980-25487037)
chr6 (73-130)||(25986746-25986803)
chr6 (73-130)||(26146578-26146635)
chr6 (83-164)||(27661908-27661989)
chr6 (452-491)||(1051151-1051191)
chr6 (239-291)||(26888957-26889009)
[»] scaffold0012 (1 HSPs)
scaffold0012 (452-495)||(202332-202375)
[»] chr7 (3 HSPs)
chr7 (452-495)||(43364179-43364222)
chr7 (452-495)||(5222284-5222327)
chr7 (452-493)||(29865181-29865223)
[»] chr1 (5 HSPs)
chr1 (452-495)||(9315892-9315935)
chr1 (452-495)||(19329305-19329348)
chr1 (452-495)||(21814749-21814792)
chr1 (452-493)||(47293952-47293993)
chr1 (452-492)||(45620397-45620437)
[»] chr3 (7 HSPs)
chr3 (452-496)||(20628599-20628643)
chr3 (452-493)||(4501049-4501090)
chr3 (452-493)||(4644574-4644615)
chr3 (452-493)||(27900458-27900499)
chr3 (452-495)||(4506375-4506418)
chr3 (452-491)||(9331391-9331430)
chr3 (451-495)||(25805754-25805798)
[»] chr8 (4 HSPs)
chr8 (456-495)||(44246155-44246194)
chr8 (453-491)||(2268603-2268641)
chr8 (452-493)||(9907157-9907198)
chr8 (452-495)||(5064246-5064289)
[»] chr5 (5 HSPs)
chr5 (452-495)||(42729061-42729104)
chr5 (458-495)||(9335396-9335433)
chr5 (452-493)||(3413542-3413583)
chr5 (452-493)||(4694463-4694504)
chr5 (452-493)||(12919202-12919243)
[»] chr4 (4 HSPs)
chr4 (452-495)||(40976843-40976886)
chr4 (452-491)||(667924-667963)
chr4 (452-493)||(8847786-8847828)
chr4 (462-495)||(23543791-23543824)
[»] chr2 (1 HSPs)
chr2 (452-493)||(22599899-22599940)
[»] scaffold0265 (1 HSPs)
scaffold0265 (452-495)||(18017-18060)


Alignment Details
Target: chr6 (Bit Score: 64; Significance: 9e-28; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 162 - 291
Target Start/End: Original strand, 26852492 - 26852623
Alignment:
Q  162 tatacagtaaattgcaaattcgttgtttctagctggagaagttttt-aaatgatgagacaagatgtaagattctatcgatgatgtttttgcagt-ttaaa 259  Q
    |||| ||| ||||||||||||||||||||||| ||||||||||||| ||||||||||||| ||||| ||||| | | |||||||||| |||| | |||||    
T  26852492 tatatagtcaattgcaaattcgttgtttctagttggagaagtttttcaaatgatgagacatgatgtgagattttgttgatgatgtttgtgcactcttaaa 26852591  T
Q  260 atattgtttcaatttactctagaggatgcttt 291  Q
    |||||||||||||||||  | |||||||||||    
T  26852592 atattgtttcaatttacatttgaggatgcttt 26852623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 162 - 276
Target Start/End: Complemental strand, 27703224 - 27703108
Alignment:
Q  162 tatacagtaaattgcaaattcgttgtttctagctggagaagtt-tttaaatgatgagacaagatgtaagattctatcgatgatgtttttgcagt-ttaaa 259  Q
    |||| ||| |||| |||||||||||||||||| |||||||||| || ||||||||| ||| ||| ||||||| | | ||| |||||| |||| | |||||    
T  27703224 tatatagtcaattacaaattcgttgtttctagttggagaagttattcaaatgatgatacatgatttaagattttctggattatgtttgtgcaatcttaaa 27703125  T
Q  260 atattgtttcaatttac 276  Q
    |||||||||| ||||||    
T  27703124 atattgtttctatttac 27703108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 150
Target Start/End: Original strand, 27079069 - 27079132
Alignment:
Q  87 ccatcttgttcttgttctctcaatctcaagattgcaggtttgtgtattgctgtttacactttac 150  Q
    |||||||||| || ||||||||||||||| |||| |||||||||  ||||||||||||||||||    
T  27079069 ccatcttgttgttattctctcaatctcaacattgaaggtttgtgctttgctgtttacactttac 27079132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 452 - 493
Target Start/End: Original strand, 13105135 - 13105176
Alignment:
Q  452 gatgtagtatcaaaagtaagtatttatgttatcgtctccaca 493  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  13105135 gatgtagtatcaaaagtaagtatttttgttatcgtctccaca 13105176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 103 - 164
Target Start/End: Original strand, 26852408 - 26852469
Alignment:
Q  103 ctctcaatctcaagattgcaggtttgtgtattgctgtttacactttacatcgttatcattat 164  Q
    ||||||||||||| |||| |||||||||  ||||||||||||||||| ||| ||||||||||    
T  26852408 ctctcaatctcaacattggaggtttgtggtttgctgtttacactttatatcattatcattat 26852469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 452 - 491
Target Start/End: Original strand, 18765619 - 18765658
Alignment:
Q  452 gatgtagtatcaaaagtaagtatttatgttatcgtctcca 491  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  18765619 gatgtagtatcaaaagtaagtatttctgttatcgtctcca 18765658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 26059616 - 26059691
Alignment:
Q  73 catcatagacttaaccatcttgttcttgttctctcaatctcaagattgcaggtttgtgtattgctgtttacacttt 148  Q
    ||||||| | |||||| |||| || || ||||||||||||||| ||||||||||||||  ||| |||||| |||||    
T  26059616 catcataaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtgctttgatgtttatacttt 26059691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 73 - 148
Target Start/End: Original strand, 26079586 - 26079661
Alignment:
Q  73 catcatagacttaaccatcttgttcttgttctctcaatctcaagattgcaggtttgtgtattgctgtttacacttt 148  Q
    ||||||| | |||||| |||| || || ||||||||||||||| ||||||||||||||  ||| |||||| |||||    
T  26079586 catcataaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtgctttgatgtttatacttt 26079661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 25077832 - 25077897
Alignment:
Q  83 ttaaccatcttgttcttgttctctcaatctcaagattgcaggtttgtgtattgctgtttacacttta 149  Q
    |||||| ||||||| ||||| ||| |||| ||| ||||||||||||||| ||| |||||||||||||    
T  25077832 ttaaccgtcttgttgttgtt-tcttaatcacaacattgcaggtttgtgttttgttgtttacacttta 25077897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 25486980 - 25487037
Alignment:
Q  73 catcatagacttaaccatcttgttcttgttctctcaatctcaagattgcaggtttgtg 130  Q
    ||||||| | |||||| |||| || || ||||||||||||||| ||||||||||||||    
T  25486980 catcataaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtg 25487037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 25986746 - 25986803
Alignment:
Q  73 catcatagacttaaccatcttgttcttgttctctcaatctcaagattgcaggtttgtg 130  Q
    ||||||| | |||||| |||| || || ||||||||||||||| ||||||||||||||    
T  25986746 catcataaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtg 25986803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 130
Target Start/End: Original strand, 26146578 - 26146635
Alignment:
Q  73 catcatagacttaaccatcttgttcttgttctctcaatctcaagattgcaggtttgtg 130  Q
    ||||||| | |||||| |||| || || ||||||||||||||| ||||||||||||||    
T  26146578 catcataaagttaaccgtcttcttgttattctctcaatctcaacattgcaggtttgtg 26146635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 164
Target Start/End: Complemental strand, 27661989 - 27661908
Alignment:
Q  83 ttaaccatcttgttcttgttctctcaatctcaagattgcaggtttgtgtattgctgtttacactttacatcgttatcattat 164  Q
    |||||| ||||||| || | |||||||||||||  |||||||||||||  || ||||||||| || | ||| ||||||||||    
T  27661989 ttaaccgtcttgttgttatcctctcaatctcaactttgcaggtttgtgctttactgtttacagttgaaatcattatcattat 27661908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 452 - 491
Target Start/End: Original strand, 1051151 - 1051191
Alignment:
Q  452 gatgtagtatcaaaagtaagta-tttatgttatcgtctcca 491  Q
    |||||||||||||||||||||| ||| ||||||||||||||    
T  1051151 gatgtagtatcaaaagtaagtattttttgttatcgtctcca 1051191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 239 - 291
Target Start/End: Original strand, 26888957 - 26889009
Alignment:
Q  239 atgatgtttttgcagtttaaaatattgtttcaatttactctagaggatgcttt 291  Q
    |||| |||| |||||| |||||||||||||||||||||| | || ||||||||    
T  26888957 atgaagtttgtgcagtctaaaatattgtttcaatttactgtggaagatgcttt 26889009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 452 - 495
Target Start/End: Original strand, 202332 - 202375
Alignment:
Q  452 gatgtagtatcaaaagtaagtatttatgttatcgtctccacagg 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  202332 gatgtagtatcaaaagtaagtatttatgttatcgtctccacagg 202375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 452 - 495
Target Start/End: Original strand, 43364179 - 43364222
Alignment:
Q  452 gatgtagtatcaaaagtaagtatttatgttatcgtctccacagg 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  43364179 gatgtagtatcaaaagtaagtatttatgttatcgtctccacagg 43364222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 452 - 495
Target Start/End: Original strand, 5222284 - 5222327
Alignment:
Q  452 gatgtagtatcaaaagtaagtatttatgttatcgtctccacagg 495  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  5222284 gatgtagtatcaaaagtaagtatttttgttatcgtctccacagg 5222327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 452 - 493
Target Start/End: Complemental strand, 29865223 - 29865181
Alignment:
Q  452 gatgtagtatcaaaagtaagtatttatgt-tatcgtctccaca 493  Q
    ||||||||||||||||||||||||| ||| |||||||||||||    
T  29865223 gatgtagtatcaaaagtaagtatttttgtgtatcgtctccaca 29865181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 452 - 495
Target Start/End: Original strand, 9315892 - 9315935
Alignment:
Q  452 gatgtagtatcaaaagtaagtatttatgttatcgtctccacagg 495  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9315892 gatgtagtatcaaaagtaagtatttatgttatcgtctccacagg 9315935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 452 - 495
Target Start/End: Original strand, 19329305 - 19329348
Alignment:
Q  452 gatgtagtatcaaaagtaagtatttatgttatcgtctccacagg 495  Q
    ||||||||||||||||||||||||| || |||||||||||||||    
T  19329305 gatgtagtatcaaaagtaagtatttttgctatcgtctccacagg 19329348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 495
Target Start/End: Original strand, 21814749 - 21814792
Alignment:
Q  452 gatgtagtatcaaaagtaagtatttatgttatcgtctccacagg 495  Q
    ||||||||||||||||||||| |||  |||||||||||||||||    
T  21814749 gatgtagtatcaaaagtaagttttttagttatcgtctccacagg 21814792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 452 - 493
Target Start/End: Original strand, 47293952 - 47293993
Alignment:
Q  452 gatgtagtatcaaaagtaagtatttatgttatcgtctccaca 493  Q
    |||||||||| |||||||| ||||| ||||||||||||||||    
T  47293952 gatgtagtattaaaagtaaatatttttgttatcgtctccaca 47293993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 452 - 492
Target Start/End: Complemental strand, 45620437 - 45620397
Alignment:
Q  452 gatgtagtatcaaaagtaagtatttatgttatcgtctccac 492  Q
    |||||||||| |||||||||||||| ||||||| |||||||    
T  45620437 gatgtagtattaaaagtaagtatttttgttatcatctccac 45620397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 452 - 496
Target Start/End: Complemental strand, 20628643 - 20628599
Alignment:
Q  452 gatgtagtatcaaaagtaagtatttatgttatcgtctccacaggt 496  Q
    ||||||||||||||||||||||||| |||||||||||||||||||    
T  20628643 gatgtagtatcaaaagtaagtatttttgttatcgtctccacaggt 20628599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 452 - 493
Target Start/End: Original strand, 4501049 - 4501090
Alignment:
Q  452 gatgtagtatcaaaagtaagtatttatgttatcgtctccaca 493  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  4501049 gatgtagtatcaaaagtaagtatttttgttatcgtctccaca 4501090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 452 - 493
Target Start/End: Complemental strand, 4644615 - 4644574
Alignment:
Q  452 gatgtagtatcaaaagtaagtatttatgttatcgtctccaca 493  Q
    ||||||||||||||||||||||||| ||||||||||||||||    
T  4644615 gatgtagtatcaaaagtaagtatttttgttatcgtctccaca 4644574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 452 - 493
Target Start/End: Original strand, 27900458 - 27900499
Alignment:
Q  452 gatgtagtatcaaaagtaagtatttatgttatcgtctccaca 493  Q
    ||||||||||||||||||||||||||||||||||| ||||||    
T  27900458 gatgtagtatcaaaagtaagtatttatgttatcgtttccaca 27900499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 452 - 495
Target Start/End: Original strand, 4506375 - 4506418
Alignment:
Q  452 gatgtagtatcaaaagtaagtatttatgttatcgtctccacagg 495  Q
    ||||||||||||||||||||||||| ||||||| ||||||||||    
T  4506375 gatgtagtatcaaaagtaagtatttttgttatcatctccacagg 4506418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 491
Target Start/End: Complemental strand, 9331430 - 9331391
Alignment:
Q  452 gatgtagtatcaaaagtaagtatttatgttatcgtctcca 491  Q
    ||||||||||||||||||||||||| ||| ||||||||||    
T  9331430 gatgtagtatcaaaagtaagtatttttgtcatcgtctcca 9331391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 451 - 495
Target Start/End: Complemental strand, 25805798 - 25805754
Alignment:
Q  451 cgatgtagtatcaaaagtaagtatttatgttatcgtctccacagg 495  Q
    |||||| ||||||||| ||||||||| ||||||||||| ||||||    
T  25805798 cgatgttgtatcaaaaataagtatttttgttatcgtcttcacagg 25805754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 456 - 495
Target Start/End: Complemental strand, 44246194 - 44246155
Alignment:
Q  456 tagtatcaaaagtaagtatttatgttatcgtctccacagg 495  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  44246194 tagtatcaaaagtaagtatttatgttatcgtctccacagg 44246155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 453 - 491
Target Start/End: Complemental strand, 2268641 - 2268603
Alignment:
Q  453 atgtagtatcaaaagtaagtatttatgttatcgtctcca 491  Q
    |||||||||||||||||||||||| ||||||||||||||    
T  2268641 atgtagtatcaaaagtaagtatttttgttatcgtctcca 2268603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 452 - 493
Target Start/End: Complemental strand, 9907198 - 9907157
Alignment:
Q  452 gatgtagtatcaaaagtaagtatttatgttatcgtctccaca 493  Q
    ||||| ||||||||||||||||||| ||||||||||||||||    
T  9907198 gatgttgtatcaaaagtaagtatttttgttatcgtctccaca 9907157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 495
Target Start/End: Complemental strand, 5064289 - 5064246
Alignment:
Q  452 gatgtagtatcaaaagtaagtatttatgttatcgtctccacagg 495  Q
    |||||| |||||||||||||||||| ||||||||||| ||||||    
T  5064289 gatgtaatatcaaaagtaagtatttttgttatcgtcttcacagg 5064246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 452 - 495
Target Start/End: Original strand, 42729061 - 42729104
Alignment:
Q  452 gatgtagtatcaaaagtaagtatttatgttatcgtctccacagg 495  Q
    ||||||||||||||||||||||||| ||||||||||||||||||    
T  42729061 gatgtagtatcaaaagtaagtatttttgttatcgtctccacagg 42729104  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 458 - 495
Target Start/End: Complemental strand, 9335433 - 9335396
Alignment:
Q  458 gtatcaaaagtaagtatttatgttatcgtctccacagg 495  Q
    ||||||||||||||||||||||||||||||||||||||    
T  9335433 gtatcaaaagtaagtatttatgttatcgtctccacagg 9335396  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 452 - 493
Target Start/End: Complemental strand, 3413583 - 3413542
Alignment:
Q  452 gatgtagtatcaaaagtaagtatttatgttatcgtctccaca 493  Q
    ||||||||||||||||||||||||| ||| ||||||||||||    
T  3413583 gatgtagtatcaaaagtaagtatttttgtcatcgtctccaca 3413542  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 452 - 493
Target Start/End: Complemental strand, 4694504 - 4694463
Alignment:
Q  452 gatgtagtatcaaaagtaagtatttatgttatcgtctccaca 493  Q
    ||||||||||||||||||||||||| ||||||||||| ||||    
T  4694504 gatgtagtatcaaaagtaagtatttttgttatcgtcttcaca 4694463  T

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Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 452 - 493
Target Start/End: Complemental strand, 12919243 - 12919202
Alignment:
Q  452 gatgtagtatcaaaagtaagtatttatgttatcgtctccaca 493  Q
    |||||||||||||||||||||||||  |||||||||||||||    
T  12919243 gatgtagtatcaaaagtaagtattttcgttatcgtctccaca 12919202  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 452 - 495
Target Start/End: Complemental strand, 40976886 - 40976843
Alignment:
Q  452 gatgtagtatcaaaagtaagtatttatgttatcgtctccacagg 495  Q
    ||||||||||||||||||||||||||||||||| ||||||||||    
T  40976886 gatgtagtatcaaaagtaagtatttatgttatcttctccacagg 40976843  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 491
Target Start/End: Complemental strand, 667963 - 667924
Alignment:
Q  452 gatgtagtatcaaaagtaagtatttatgttatcgtctcca 491  Q
    ||||||||||||||||||||||||| |||||| |||||||    
T  667963 gatgtagtatcaaaagtaagtatttttgttattgtctcca 667924  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 452 - 493
Target Start/End: Original strand, 8847786 - 8847828
Alignment:
Q  452 gatgtagtatcaaaagtaagtatttatgt-tatcgtctccaca 493  Q
    ||||||||||||||||||||||||| ||| |||||||||||||    
T  8847786 gatgtagtatcaaaagtaagtatttttgtgtatcgtctccaca 8847828  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 462 - 495
Target Start/End: Complemental strand, 23543824 - 23543791
Alignment:
Q  462 caaaagtaagtatttatgttatcgtctccacagg 495  Q
    ||||||||| ||||||||||||||||||||||||    
T  23543824 caaaagtaaatatttatgttatcgtctccacagg 23543791  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 452 - 493
Target Start/End: Original strand, 22599899 - 22599940
Alignment:
Q  452 gatgtagtatcaaaagtaagtatttatgttatcgtctccaca 493  Q
    |||||| |||||||||||||||||| ||||||||||||||||    
T  22599899 gatgtattatcaaaagtaagtatttttgttatcgtctccaca 22599940  T

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Target: scaffold0265 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0265
Description:

Target: scaffold0265; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 452 - 495
Target Start/End: Complemental strand, 18060 - 18017
Alignment:
Q  452 gatgtagtatcaaaagtaagtatttatgttatcgtctccacagg 495  Q
    ||||||||||||||||||||| |||  |||||||||||||||||    
T  18060 gatgtagtatcaaaagtaagttttttagttatcgtctccacagg 18017  T

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