View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8265_low_4 (Length: 340)

Name: NF8265_low_4
Description: NF8265
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8265_low_4
NF8265_low_4
[»] scaffold0116 (2 HSPs)
scaffold0116 (18-83)||(44655-44720)
scaffold0116 (278-313)||(44362-44397)
[»] scaffold0112 (1 HSPs)
scaffold0112 (18-83)||(22362-22427)
[»] chr7 (38 HSPs)
chr7 (18-83)||(17231684-17231749)
chr7 (18-82)||(14270874-14270938)
chr7 (18-83)||(10502271-10502336)
chr7 (25-83)||(8467686-8467744)
chr7 (18-68)||(45848270-45848320)
chr7 (278-313)||(8468012-8468047)
chr7 (278-313)||(14270612-14270647)
chr7 (278-313)||(45848201-45848236)
chr7 (279-313)||(6170709-6170743)
chr7 (279-313)||(11066168-11066202)
chr7 (279-313)||(12371044-12371078)
chr7 (279-313)||(12757377-12757411)
chr7 (279-313)||(14220328-14220362)
chr7 (279-313)||(15120593-15120627)
chr7 (279-313)||(15439258-15439292)
chr7 (279-313)||(18876125-18876159)
chr7 (279-313)||(30822092-30822126)
chr7 (279-313)||(36686477-36686511)
chr7 (279-313)||(44373715-44373749)
chr7 (279-313)||(44382580-44382614)
chr7 (49-82)||(25928305-25928338)
chr7 (279-311)||(16458695-16458727)
chr7 (279-311)||(19281820-19281852)
chr7 (279-311)||(43278022-43278054)
chr7 (278-313)||(17232137-17232172)
chr7 (49-83)||(1859710-1859744)
chr7 (279-313)||(10064304-10064338)
chr7 (279-313)||(14162161-14162195)
chr7 (18-68)||(15112318-15112368)
chr7 (18-68)||(15115890-15115940)
chr7 (279-313)||(18423317-18423351)
chr7 (279-313)||(32434907-32434941)
chr7 (279-313)||(47093907-47093941)
chr7 (18-63)||(9390549-9390594)
chr7 (49-82)||(10607255-10607288)
chr7 (284-313)||(13699955-13699984)
chr7 (49-82)||(16582532-16582565)
chr7 (279-311)||(37785594-37785626)
[»] chr3 (31 HSPs)
chr3 (18-83)||(55385660-55385725)
chr3 (18-83)||(12204168-12204234)
chr3 (279-313)||(12269064-12269098)
chr3 (279-313)||(12506915-12506949)
chr3 (279-313)||(12513058-12513092)
chr3 (279-313)||(14642788-14642822)
chr3 (279-313)||(19574693-19574727)
chr3 (279-313)||(35065899-35065933)
chr3 (279-313)||(37037635-37037669)
chr3 (279-313)||(41173595-41173629)
chr3 (279-313)||(42327557-42327591)
chr3 (279-313)||(53647114-53647148)
chr3 (18-63)||(1466208-1466253)
chr3 (49-82)||(14670134-14670167)
chr3 (18-75)||(49390416-49390473)
chr3 (18-69)||(22651367-22651419)
chr3 (279-310)||(14251059-14251090)
chr3 (279-313)||(6469656-6469690)
chr3 (279-313)||(9644236-9644270)
chr3 (279-313)||(14153665-14153699)
chr3 (279-313)||(15076462-15076496)
chr3 (49-83)||(15464300-15464334)
chr3 (279-313)||(17043838-17043872)
chr3 (279-313)||(19569559-19569593)
chr3 (279-313)||(22307878-22307912)
chr3 (279-313)||(50349298-50349332)
chr3 (49-82)||(14681656-14681689)
chr3 (18-63)||(22791591-22791636)
chr3 (284-313)||(45531859-45531888)
chr3 (279-311)||(16728068-16728100)
chr3 (281-313)||(49390275-49390307)
[»] chr1 (22 HSPs)
chr1 (18-83)||(10492639-10492704)
chr1 (18-83)||(20307923-20307988)
chr1 (37-83)||(21740604-21740650)
chr1 (20-83)||(41306458-41306521)
chr1 (278-313)||(46383127-46383162)
chr1 (279-313)||(20587474-20587508)
chr1 (279-313)||(20592012-20592046)
chr1 (279-313)||(24723856-24723890)
chr1 (279-313)||(38888349-38888383)
chr1 (279-313)||(41227969-41228003)
chr1 (279-311)||(16059607-16059639)
chr1 (278-313)||(41306165-41306200)
chr1 (279-313)||(1642262-1642296)
chr1 (279-313)||(7053281-7053315)
chr1 (279-313)||(8277192-8277226)
chr1 (18-68)||(12270994-12271044)
chr1 (279-313)||(20634850-20634884)
chr1 (283-313)||(28195056-28195086)
chr1 (18-63)||(35982500-35982545)
chr1 (49-82)||(41801177-41801210)
chr1 (49-82)||(41801213-41801246)
chr1 (279-311)||(51475794-51475826)
[»] scaffold0043 (1 HSPs)
scaffold0043 (18-83)||(8822-8887)
[»] chr8 (21 HSPs)
chr8 (18-83)||(27473546-27473611)
chr8 (20-83)||(13428854-13428917)
chr8 (18-83)||(38550856-38550920)
chr8 (278-313)||(1323655-1323690)
chr8 (278-313)||(27472860-27472895)
chr8 (278-313)||(38550563-38550598)
chr8 (279-313)||(20179770-20179804)
chr8 (279-313)||(29764050-29764084)
chr8 (279-313)||(39695853-39695887)
chr8 (279-313)||(42266832-42266866)
chr8 (18-82)||(37514929-37514994)
chr8 (278-313)||(13428620-13428655)
chr8 (279-313)||(19127733-19127767)
chr8 (279-313)||(20046677-20046711)
chr8 (279-313)||(22206958-22206992)
chr8 (279-313)||(22259602-22259636)
chr8 (279-313)||(23669197-23669231)
chr8 (279-313)||(26219347-26219381)
chr8 (284-313)||(5083567-5083596)
chr8 (18-63)||(5610421-5610466)
chr8 (41-82)||(37515097-37515138)
[»] chr4 (19 HSPs)
chr4 (18-83)||(361371-361436)
chr4 (18-83)||(19856832-19856897)
chr4 (279-313)||(4859053-4859087)
chr4 (279-313)||(9637635-9637669)
chr4 (279-313)||(10357757-10357791)
chr4 (279-313)||(13037042-13037076)
chr4 (279-313)||(16296279-16296313)
chr4 (279-313)||(19734116-19734150)
chr4 (279-313)||(33244469-33244503)
chr4 (279-313)||(40229262-40229296)
chr4 (279-313)||(46642377-46642411)
chr4 (279-313)||(51992301-51992335)
chr4 (18-66)||(6189859-6189907)
chr4 (18-69)||(13592962-13593014)
chr4 (278-313)||(361763-361798)
chr4 (278-313)||(19857090-19857125)
chr4 (279-313)||(19436000-19436034)
chr4 (279-313)||(44773613-44773647)
chr4 (18-63)||(15189612-15189657)
[»] chr6 (16 HSPs)
chr6 (20-83)||(15874725-15874788)
chr6 (20-83)||(18913159-18913222)
chr6 (29-81)||(31631027-31631079)
chr6 (279-313)||(20412019-20412053)
chr6 (279-313)||(23492503-23492537)
chr6 (279-313)||(23498101-23498135)
chr6 (49-82)||(2076397-2076430)
chr6 (279-311)||(27329143-27329175)
chr6 (279-311)||(27389883-27389915)
chr6 (40-83)||(18319019-18319062)
chr6 (40-83)||(18322419-18322462)
chr6 (279-310)||(19830191-19830222)
chr6 (279-313)||(20734672-20734706)
chr6 (279-313)||(23017431-23017465)
chr6 (18-67)||(27850460-27850510)
chr6 (41-69)||(25621668-25621696)
[»] scaffold0278 (1 HSPs)
scaffold0278 (18-83)||(6785-6850)
[»] scaffold0035 (2 HSPs)
scaffold0035 (18-83)||(105847-105912)
scaffold0035 (278-313)||(106073-106108)
[»] scaffold0004 (1 HSPs)
scaffold0004 (18-83)||(361882-361947)
[»] scaffold0036 (1 HSPs)
scaffold0036 (279-314)||(78627-78662)
[»] scaffold0630 (1 HSPs)
scaffold0630 (279-313)||(7875-7909)
[»] scaffold0462 (2 HSPs)
scaffold0462 (279-313)||(188-222)
scaffold0462 (279-313)||(5694-5728)
[»] scaffold0371 (1 HSPs)
scaffold0371 (279-313)||(11569-11603)
[»] scaffold0195 (1 HSPs)
scaffold0195 (279-313)||(16964-16998)
[»] scaffold0170 (1 HSPs)
scaffold0170 (279-313)||(2304-2338)
[»] scaffold0077 (1 HSPs)
scaffold0077 (279-313)||(13855-13889)
[»] scaffold0042 (1 HSPs)
scaffold0042 (279-313)||(47765-47799)
[»] scaffold0039 (1 HSPs)
scaffold0039 (279-313)||(11108-11142)
[»] scaffold0031 (1 HSPs)
scaffold0031 (48-82)||(37172-37206)
[»] scaffold0019 (1 HSPs)
scaffold0019 (279-313)||(26058-26092)
[»] scaffold0001 (2 HSPs)
scaffold0001 (279-313)||(31609-31643)
scaffold0001 (279-313)||(36916-36950)
[»] chr5 (17 HSPs)
chr5 (279-313)||(12122724-12122758)
chr5 (279-313)||(16227117-16227151)
chr5 (279-313)||(20565195-20565229)
chr5 (279-313)||(21555606-21555640)
chr5 (279-313)||(26761204-26761238)
chr5 (18-63)||(5889982-5890027)
chr5 (50-82)||(22108384-22108416)
chr5 (279-311)||(36510048-36510080)
chr5 (283-313)||(5889766-5889796)
chr5 (279-313)||(17874807-17874841)
chr5 (279-313)||(21558271-21558305)
chr5 (283-313)||(21742148-21742178)
chr5 (279-313)||(23202981-23203015)
chr5 (279-313)||(39244744-39244778)
chr5 (18-82)||(6765165-6765230)
chr5 (49-82)||(22120526-22120559)
chr5 (18-69)||(262397-262449)
[»] chr2 (17 HSPs)
chr2 (279-313)||(10897904-10897938)
chr2 (279-313)||(18389536-18389570)
chr2 (279-313)||(25085192-25085226)
chr2 (279-311)||(24782180-24782212)
chr2 (279-311)||(24883204-24883236)
chr2 (279-313)||(356780-356814)
chr2 (279-313)||(9974667-9974701)
chr2 (279-313)||(22688465-22688499)
chr2 (279-313)||(28576734-28576768)
chr2 (279-313)||(45030366-45030400)
chr2 (279-312)||(5032641-5032674)
chr2 (49-82)||(9784105-9784138)
chr2 (18-82)||(27485912-27485977)
chr2 (279-307)||(19357726-19357754)
chr2 (281-313)||(22500627-22500659)
chr2 (281-313)||(22508561-22508593)
chr2 (279-307)||(23285456-23285484)
[»] scaffold0780 (1 HSPs)
scaffold0780 (18-82)||(4136-4201)
[»] scaffold0575 (1 HSPs)
scaffold0575 (49-82)||(6895-6928)
[»] scaffold0375 (1 HSPs)
scaffold0375 (279-312)||(9619-9652)
[»] scaffold0293 (1 HSPs)
scaffold0293 (49-82)||(21273-21306)
[»] scaffold0013 (1 HSPs)
scaffold0013 (49-82)||(74266-74299)
[»] scaffold0450 (1 HSPs)
scaffold0450 (279-311)||(13425-13457)
[»] scaffold0328 (1 HSPs)
scaffold0328 (279-311)||(19887-19919)
[»] scaffold0509 (1 HSPs)
scaffold0509 (279-310)||(10079-10110)
[»] scaffold0230 (2 HSPs)
scaffold0230 (40-83)||(21407-21450)
scaffold0230 (40-83)||(24402-24445)
[»] scaffold0220 (2 HSPs)
scaffold0220 (279-310)||(3237-3268)
scaffold0220 (279-313)||(15502-15536)
[»] scaffold1815 (1 HSPs)
scaffold1815 (279-313)||(808-842)
[»] scaffold0737 (1 HSPs)
scaffold0737 (279-313)||(6964-6998)
[»] scaffold0529 (1 HSPs)
scaffold0529 (279-313)||(7088-7122)
[»] scaffold0241 (1 HSPs)
scaffold0241 (279-313)||(1147-1181)
[»] scaffold0149 (1 HSPs)
scaffold0149 (279-313)||(20430-20464)
[»] scaffold0134 (1 HSPs)
scaffold0134 (279-313)||(10460-10494)
[»] scaffold0098 (1 HSPs)
scaffold0098 (283-313)||(38899-38929)
[»] scaffold0020 (1 HSPs)
scaffold0020 (279-313)||(142254-142288)
[»] scaffold0008 (1 HSPs)
scaffold0008 (279-313)||(71549-71583)
[»] scaffold0601 (1 HSPs)
scaffold0601 (18-63)||(8781-8826)
[»] scaffold0142 (1 HSPs)
scaffold0142 (49-82)||(8674-8707)
[»] scaffold0108 (1 HSPs)
scaffold0108 (279-312)||(5153-5186)
[»] scaffold0056 (1 HSPs)
scaffold0056 (54-83)||(79829-79858)
[»] scaffold0218 (1 HSPs)
scaffold0218 (285-313)||(9319-9347)
[»] scaffold0200 (1 HSPs)
scaffold0200 (43-83)||(11151-11191)


Alignment Details
Target: scaffold0116 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: scaffold0116
Description:

Target: scaffold0116; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 44720 - 44655
Alignment:
Q  18 acatcaaaaatatcatctgtaacacacaacgtaatcatcatctcataataacttagaccacacaac 83  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  44720 acatcataaatatcatctttaacacacaacgtaatcatcatctcataataacttagaccacacaac 44655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0116; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 313
Target Start/End: Complemental strand, 44397 - 44362
Alignment:
Q  278 ttaaacaacaacgattaataaatattaatacttcac 313  Q
    ||||||||||||||||||||||||||||||||||||    
T  44397 ttaaacaacaacgattaataaatattaatacttcac 44362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0112 (Bit Score: 58; Significance: 2e-24; HSPs: 1)
Name: scaffold0112
Description:

Target: scaffold0112; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 22427 - 22362
Alignment:
Q  18 acatcaaaaatatcatctgtaacacacaacgtaatcatcatctcataataacttagaccacacaac 83  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  22427 acatcataaatatcatctttaacacacaacgtaatcatcatctcataataacttagaccacacaac 22362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 58; Significance: 2e-24; HSPs: 38)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 17231684 - 17231749
Alignment:
Q  18 acatcaaaaatatcatctgtaacacacaacgtaatcatcatctcataataacttagaccacacaac 83  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  17231684 acatcataaatatcatctttaacacacaacgtaatcatcatctcataataacttagaccacacaac 17231749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 14270938 - 14270874
Alignment:
Q  18 acatcaaaaatatcatctgtaacacacaacgtaatcatcatctcataataacttagaccacacaa 82  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14270938 acatcataaatatcatctttaacacacaacgtaatcatcatctcataataacttagaccacacaa 14270874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 10502336 - 10502271
Alignment:
Q  18 acatcaaaaatatcatctgtaacacacaacgtaatcatcatctcataataacttagaccacacaac 83  Q
    |||||| ||||||||||| ||||||||||| ||||||||||| |||||||||||||||| ||||||    
T  10502336 acatcataaatatcatctttaacacacaacataatcatcatcacataataacttagaccgcacaac 10502271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 25 - 83
Target Start/End: Original strand, 8467686 - 8467744
Alignment:
Q  25 aaatatcatctgtaacacacaacgtaatcatcatctcataataacttagaccacacaac 83  Q
    |||||| |||| || |||||||| |||||||||||||||||||||||||||||||||||    
T  8467686 aaatattatctttagcacacaacataatcatcatctcataataacttagaccacacaac 8467744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 45848320 - 45848270
Alignment:
Q  18 acatcaaaaatatcatctgtaacacacaacgtaatcatcatctcataataa 68  Q
    |||||| ||||||||||| ||||||| ||||||||||||||||||||||||    
T  45848320 acatcataaatatcatctttaacacagaacgtaatcatcatctcataataa 45848270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 313
Target Start/End: Original strand, 8468012 - 8468047
Alignment:
Q  278 ttaaacaacaacgattaataaatattaatacttcac 313  Q
    ||||||||||||||||||||||||||||||||||||    
T  8468012 ttaaacaacaacgattaataaatattaatacttcac 8468047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 313
Target Start/End: Complemental strand, 14270647 - 14270612
Alignment:
Q  278 ttaaacaacaacgattaataaatattaatacttcac 313  Q
    ||||||||||||||||||||||||||||||||||||    
T  14270647 ttaaacaacaacgattaataaatattaatacttcac 14270612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 313
Target Start/End: Complemental strand, 45848236 - 45848201
Alignment:
Q  278 ttaaacaacaacgattaataaatattaatacttcac 313  Q
    ||||||||||||||||||||||||||||||||||||    
T  45848236 ttaaacaacaacgattaataaatattaatacttcac 45848201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 6170743 - 6170709
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  6170743 taaacaacaacgattaataaatattaatacttcac 6170709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 11066168 - 11066202
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  11066168 taaacaacaacgattaataaatattaatacttcac 11066202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 12371044 - 12371078
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  12371044 taaacaacaacgattaataaatattaatacttcac 12371078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 12757411 - 12757377
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  12757411 taaacaacaacgattaataaatattaatacttcac 12757377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 14220362 - 14220328
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  14220362 taaacaacaacgattaataaatattaatacttcac 14220328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 15120627 - 15120593
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  15120627 taaacaacaacgattaataaatattaatacttcac 15120593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 15439258 - 15439292
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  15439258 taaacaacaacgattaataaatattaatacttcac 15439292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 18876159 - 18876125
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  18876159 taaacaacaacgattaataaatattaatacttcac 18876125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 30822126 - 30822092
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  30822126 taaacaacaacgattaataaatattaatacttcac 30822092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 36686511 - 36686477
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  36686511 taaacaacaacgattaataaatattaatacttcac 36686477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 44373715 - 44373749
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  44373715 taaacaacaacgattaataaatattaatacttcac 44373749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 44382580 - 44382614
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  44382580 taaacaacaacgattaataaatattaatacttcac 44382614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 25928338 - 25928305
Alignment:
Q  49 taatcatcatctcataataacttagaccacacaa 82  Q
    ||||||||||||||||||||||||||||||||||    
T  25928338 taatcatcatctcataataacttagaccacacaa 25928305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 311
Target Start/End: Original strand, 16458695 - 16458727
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttc 311  Q
    |||||||||||||||||||||||||||||||||    
T  16458695 taaacaacaacgattaataaatattaatacttc 16458727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 311
Target Start/End: Original strand, 19281820 - 19281852
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttc 311  Q
    |||||||||||||||||||||||||||||||||    
T  19281820 taaacaacaacgattaataaatattaatacttc 19281852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 43278054 - 43278022
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttc 311  Q
    |||||||||||||||||||||||||||||||||    
T  43278054 taaacaacaacgattaataaatattaatacttc 43278022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 313
Target Start/End: Original strand, 17232137 - 17232172
Alignment:
Q  278 ttaaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||| |||||||||||||||||||||||    
T  17232137 ttaaacaacaacaattaataaatattaatacttcac 17232172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 83
Target Start/End: Complemental strand, 1859744 - 1859710
Alignment:
Q  49 taatcatcatctcataataacttagaccacacaac 83  Q
    ||||||||||| |||||||||||||||||||||||    
T  1859744 taatcatcatcacataataacttagaccacacaac 1859710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 10064338 - 10064304
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||| ||||||||||||||||||||||||    
T  10064338 taaacaacaatgattaataaatattaatacttcac 10064304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 14162195 - 14162161
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    ||||||||||||||||||||||||||||| |||||    
T  14162195 taaacaacaacgattaataaatattaatatttcac 14162161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 15112318 - 15112368
Alignment:
Q  18 acatcaaaaatatcatctgtaacacacaacgtaatcatcatctcataataa 68  Q
    |||||| ||||||||||| ||||||| | | ||||||||||||||||||||    
T  15112318 acatcataaatatcatctttaacacatagcataatcatcatctcataataa 15112368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 15115890 - 15115940
Alignment:
Q  18 acatcaaaaatatcatctgtaacacacaacgtaatcatcatctcataataa 68  Q
    |||||| ||||||||||| ||||||| | | ||||||||||||||||||||    
T  15115890 acatcataaatatcatctttaacacatagcataatcatcatctcataataa 15115940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 18423317 - 18423351
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||| ||||||||||||||||||||||||    
T  18423317 taaacaacaatgattaataaatattaatacttcac 18423351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 32434941 - 32434907
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    ||||||| |||||||||||||||||||||||||||    
T  32434941 taaacaaaaacgattaataaatattaatacttcac 32434907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 47093907 - 47093941
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    ||||||||||||||||||||||||||||| |||||    
T  47093907 taaacaacaacgattaataaatattaatatttcac 47093941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 9390594 - 9390549
Alignment:
Q  18 acatcaaaaatatcatctgtaacacacaacgtaatcatcatctcat 63  Q
    |||||| || |||||||| ||||||||||| |||||||||||||||    
T  9390594 acatcataagtatcatctttaacacacaacataatcatcatctcat 9390549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 10607288 - 10607255
Alignment:
Q  49 taatcatcatctcataataacttagaccacacaa 82  Q
    |||||||||||||||||||||||| |||||||||    
T  10607288 taatcatcatctcataataacttataccacacaa 10607255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 313
Target Start/End: Complemental strand, 13699984 - 13699955
Alignment:
Q  284 aacaacgattaataaatattaatacttcac 313  Q
    ||||||||||||||||||||||||||||||    
T  13699984 aacaacgattaataaatattaatacttcac 13699955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 82
Target Start/End: Original strand, 16582532 - 16582565
Alignment:
Q  49 taatcatcatctcataataacttagaccacacaa 82  Q
    |||||||||||||||||||||||||| |||||||    
T  16582532 taatcatcatctcataataacttagatcacacaa 16582565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 37785626 - 37785594
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttc 311  Q
    |||||||||||||||||||||| ||||||||||    
T  37785626 taaacaacaacgattaataaatgttaatacttc 37785594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 58; Significance: 2e-24; HSPs: 31)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 55385725 - 55385660
Alignment:
Q  18 acatcaaaaatatcatctgtaacacacaacgtaatcatcatctcataataacttagaccacacaac 83  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  55385725 acatcataaatatcatctttaacacacaacgtaatcatcatctcataataacttagaccacacaac 55385660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 12204234 - 12204168
Alignment:
Q  18 acatcaaaaatatcatctgt-aacacacaacgtaatcatcatctcataataacttagaccacacaac 83  Q
    |||||| ||||||||||| | |||||||||| ||||||||||||||||||||| || || |||||||    
T  12204234 acatcataaatatcatcttttaacacacaacataatcatcatctcataataacataaacaacacaac 12204168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 12269064 - 12269098
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  12269064 taaacaacaacgattaataaatattaatacttcac 12269098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 12506949 - 12506915
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  12506949 taaacaacaacgattaataaatattaatacttcac 12506915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 12513092 - 12513058
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  12513092 taaacaacaacgattaataaatattaatacttcac 12513058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 14642822 - 14642788
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  14642822 taaacaacaacgattaataaatattaatacttcac 14642788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 19574693 - 19574727
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  19574693 taaacaacaacgattaataaatattaatacttcac 19574727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 35065933 - 35065899
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  35065933 taaacaacaacgattaataaatattaatacttcac 35065899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 37037635 - 37037669
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  37037635 taaacaacaacgattaataaatattaatacttcac 37037669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 41173629 - 41173595
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  41173629 taaacaacaacgattaataaatattaatacttcac 41173595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 42327591 - 42327557
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  42327591 taaacaacaacgattaataaatattaatacttcac 42327557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 53647148 - 53647114
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  53647148 taaacaacaacgattaataaatattaatacttcac 53647114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 1466253 - 1466208
Alignment:
Q  18 acatcaaaaatatcatctgtaacacacaacgtaatcatcatctcat 63  Q
    |||||| ||||||||||| ||||||||||| |||||||||||||||    
T  1466253 acatcataaatatcatctttaacacacaacataatcatcatctcat 1466208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 82
Target Start/End: Original strand, 14670134 - 14670167
Alignment:
Q  49 taatcatcatctcataataacttagaccacacaa 82  Q
    ||||||||||||||||||||||||||||||||||    
T  14670134 taatcatcatctcataataacttagaccacacaa 14670167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 75
Target Start/End: Complemental strand, 49390473 - 49390416
Alignment:
Q  18 acatcaaaaatatcatctgtaacacacaacgtaatcatcatctcataataacttagac 75  Q
    |||||| ||||||||||| ||||||||| | ||||||||| ||||||||||| |||||    
T  49390473 acatcataaatatcatctttaacacacagcataatcatcacctcataataacatagac 49390416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 22651367 - 22651419
Alignment:
Q  18 acatcaaaaatatcatctgt-aacacacaacgtaatcatcatctcataataac 69  Q
    |||||||||||||||||| | |||||||||| |||||||||||||| ||||||    
T  22651367 acatcaaaaatatcatcttttaacacacaacataatcatcatctcacaataac 22651419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 310
Target Start/End: Complemental strand, 14251090 - 14251059
Alignment:
Q  279 taaacaacaacgattaataaatattaatactt 310  Q
    ||||||||||||||||||||||||||||||||    
T  14251090 taaacaacaacgattaataaatattaatactt 14251059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 6469690 - 6469656
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||| ||||||||||||||||||||||||    
T  6469690 taaacaacaatgattaataaatattaatacttcac 6469656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 9644236 - 9644270
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||| ||||||||||||||||||||||||    
T  9644236 taaacaacaatgattaataaatattaatacttcac 9644270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 14153699 - 14153665
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    ||||||||| |||||||||||||||||||||||||    
T  14153699 taaacaacaccgattaataaatattaatacttcac 14153665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 15076496 - 15076462
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||| ||||||||||||||||||||||||    
T  15076496 taaacaacaatgattaataaatattaatacttcac 15076462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 49 - 83
Target Start/End: Original strand, 15464300 - 15464334
Alignment:
Q  49 taatcatcatctcataataacttagaccacacaac 83  Q
    ||||||||||| |||||||||||||||||||||||    
T  15464300 taatcatcatcacataataacttagaccacacaac 15464334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 17043838 - 17043872
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    ||||||||||| |||||||||||||||||||||||    
T  17043838 taaacaacaacaattaataaatattaatacttcac 17043872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 19569593 - 19569559
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    ||||||||||||||||||||||||||||| |||||    
T  19569593 taaacaacaacgattaataaatattaatatttcac 19569559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 22307912 - 22307878
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    ||||||| |||||||||||||||||||||||||||    
T  22307912 taaacaataacgattaataaatattaatacttcac 22307878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 50349332 - 50349298
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||| ||||||||||||||    
T  50349332 taaacaacaacgattaataagtattaatacttcac 50349298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 82
Target Start/End: Original strand, 14681656 - 14681689
Alignment:
Q  49 taatcatcatctcataataacttagaccacacaa 82  Q
    |||||||||||||||| |||||||||||||||||    
T  14681656 taatcatcatctcatagtaacttagaccacacaa 14681689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 22791591 - 22791636
Alignment:
Q  18 acatcaaaaatatcatctgtaacacacaacgtaatcatcatctcat 63  Q
    |||||| ||||||||||| |||||| |||| |||||||||||||||    
T  22791591 acatcataaatatcatctttaacacccaacataatcatcatctcat 22791636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 313
Target Start/End: Complemental strand, 45531888 - 45531859
Alignment:
Q  284 aacaacgattaataaatattaatacttcac 313  Q
    ||||||||||||||||||||||||||||||    
T  45531888 aacaacgattaataaatattaatacttcac 45531859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 311
Target Start/End: Original strand, 16728068 - 16728100
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttc 311  Q
    |||||||||||||||||||||| ||||||||||    
T  16728068 taaacaacaacgattaataaatgttaatacttc 16728100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 313
Target Start/End: Complemental strand, 49390307 - 49390275
Alignment:
Q  281 aacaacaacgattaataaatattaatacttcac 313  Q
    |||||||| ||||||||||||||||||||||||    
T  49390307 aacaacaatgattaataaatattaatacttcac 49390275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 22)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 10492704 - 10492639
Alignment:
Q  18 acatcaaaaatatcatctgtaacacacaacgtaatcatcatctcataataacttagaccacacaac 83  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  10492704 acatcataaatatcatctttaacacacaacgtaatcatcatctcataataacttagaccacacaac 10492639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 20307923 - 20307988
Alignment:
Q  18 acatcaaaaatatcatctgtaacacacaacgtaatcatcatctcataataacttagaccacacaac 83  Q
    |||||| ||||||||||| ||||||||||| ||||||||||||||||| |||||||||||||||||    
T  20307923 acatcataaatatcatctttaacacacaacataatcatcatctcataaaaacttagaccacacaac 20307988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 37 - 83
Target Start/End: Complemental strand, 21740650 - 21740604
Alignment:
Q  37 taacacacaacgtaatcatcatctcataataacttagaccacacaac 83  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  21740650 taacacacaacgtaatcatcatctcataataacttagaccacacaac 21740604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 41306521 - 41306458
Alignment:
Q  20 atcaaaaatatcatctgtaacacacaacgtaatcatcatctcataataacttagaccacacaac 83  Q
    |||| |||||| |||| ||||||||||||||||||| ||||||||||||||||||||| |||||    
T  41306521 atcataaatattatctttaacacacaacgtaatcattatctcataataacttagaccatacaac 41306458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 313
Target Start/End: Complemental strand, 46383162 - 46383127
Alignment:
Q  278 ttaaacaacaacgattaataaatattaatacttcac 313  Q
    ||||||||||||||||||||||||||||||||||||    
T  46383162 ttaaacaacaacgattaataaatattaatacttcac 46383127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 20587474 - 20587508
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  20587474 taaacaacaacgattaataaatattaatacttcac 20587508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 20592012 - 20592046
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  20592012 taaacaacaacgattaataaatattaatacttcac 20592046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 24723890 - 24723856
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  24723890 taaacaacaacgattaataaatattaatacttcac 24723856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 38888383 - 38888349
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  38888383 taaacaacaacgattaataaatattaatacttcac 38888349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 41228003 - 41227969
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  41228003 taaacaacaacgattaataaatattaatacttcac 41227969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 16059639 - 16059607
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttc 311  Q
    |||||||||||||||||||||||||||||||||    
T  16059639 taaacaacaacgattaataaatattaatacttc 16059607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 313
Target Start/End: Complemental strand, 41306200 - 41306165
Alignment:
Q  278 ttaaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||| |||||||||||||||||||||||    
T  41306200 ttaaacaacaacaattaataaatattaatacttcac 41306165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 1642262 - 1642296
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    ||||||||||||||||| |||||||||||||||||    
T  1642262 taaacaacaacgattaaaaaatattaatacttcac 1642296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 7053315 - 7053281
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||| ||||||||||||||||||||||||    
T  7053315 taaacaacaatgattaataaatattaatacttcac 7053281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 8277226 - 8277192
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||| ||||||||||||||||||||||||    
T  8277226 taaacaacaatgattaataaatattaatacttcac 8277192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 68
Target Start/End: Original strand, 12270994 - 12271044
Alignment:
Q  18 acatcaaaaatatcatctgtaacacacaacgtaatcatcatctcataataa 68  Q
    |||||| ||||||||||| ||||||| | | ||||||||||||||||||||    
T  12270994 acatcataaatatcatctttaacacatagcataatcatcatctcataataa 12271044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 20634884 - 20634850
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||| ||||||||||||||||||||||||    
T  20634884 taaacaacaaagattaataaatattaatacttcac 20634850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 313
Target Start/End: Complemental strand, 28195086 - 28195056
Alignment:
Q  283 caacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||    
T  28195086 caacaacgattaataaatattaatacttcac 28195056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 35982545 - 35982500
Alignment:
Q  18 acatcaaaaatatcatctgtaacacacaacgtaatcatcatctcat 63  Q
    |||||| ||||||||||| ||||||||| | |||||||||||||||    
T  35982545 acatcataaatatcatctttaacacacagcataatcatcatctcat 35982500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 41801210 - 41801177
Alignment:
Q  49 taatcatcatctcataataacttagaccacacaa 82  Q
    |||||| |||||||||||||||||||||||||||    
T  41801210 taatcaccatctcataataacttagaccacacaa 41801177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 41801246 - 41801213
Alignment:
Q  49 taatcatcatctcataataacttagaccacacaa 82  Q
    ||||||||||||||||||||||||||| ||||||    
T  41801246 taatcatcatctcataataacttagacaacacaa 41801213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 311
Target Start/End: Original strand, 51475794 - 51475826
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttc 311  Q
    |||||||||||||||||||||| ||||||||||    
T  51475794 taaacaacaacgattaataaatgttaatacttc 51475826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 8822 - 8887
Alignment:
Q  18 acatcaaaaatatcatctgtaacacacaacgtaatcatcatctcataataacttagaccacacaac 83  Q
    |||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  8822 acatcataaatatcatctttaacacacaacataatcatcatctcataataacttagaccacacaac 8887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 6e-22; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 27473611 - 27473546
Alignment:
Q  18 acatcaaaaatatcatctgtaacacacaacgtaatcatcatctcataataacttagaccacacaac 83  Q
    |||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  27473611 acatcataaatatcatctttaacacacaacataatcatcatctcataataacttagaccacacaac 27473546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 20 - 83
Target Start/End: Complemental strand, 13428917 - 13428854
Alignment:
Q  20 atcaaaaatatcatctgtaacacacaacgtaatcatcatctcataataacttagaccacacaac 83  Q
    |||| ||||||||||| ||||||||||| |||| ||||||||||||||||||||||||||||||    
T  13428917 atcataaatatcatctttaacacacaacataataatcatctcataataacttagaccacacaac 13428854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 38550920 - 38550856
Alignment:
Q  18 acatcaaaaatatcatctgtaacacacaacgtaatcatcatctcataataacttagaccacacaac 83  Q
    |||||| ||||||||| | |||||||||||||||||||||||||||||||||| ||||||||||||    
T  38550920 acatcataaatatcattt-taacacacaacgtaatcatcatctcataataactcagaccacacaac 38550856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 313
Target Start/End: Complemental strand, 1323690 - 1323655
Alignment:
Q  278 ttaaacaacaacgattaataaatattaatacttcac 313  Q
    ||||||||||||||||||||||||||||||||||||    
T  1323690 ttaaacaacaacgattaataaatattaatacttcac 1323655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 313
Target Start/End: Complemental strand, 27472895 - 27472860
Alignment:
Q  278 ttaaacaacaacgattaataaatattaatacttcac 313  Q
    ||||||||||||||||||||||||||||||||||||    
T  27472895 ttaaacaacaacgattaataaatattaatacttcac 27472860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 278 - 313
Target Start/End: Complemental strand, 38550598 - 38550563
Alignment:
Q  278 ttaaacaacaacgattaataaatattaatacttcac 313  Q
    ||||||||||||||||||||||||||||||||||||    
T  38550598 ttaaacaacaacgattaataaatattaatacttcac 38550563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 20179804 - 20179770
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  20179804 taaacaacaacgattaataaatattaatacttcac 20179770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 29764084 - 29764050
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  29764084 taaacaacaacgattaataaatattaatacttcac 29764050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 39695887 - 39695853
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  39695887 taaacaacaacgattaataaatattaatacttcac 39695853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 42266866 - 42266832
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  42266866 taaacaacaacgattaataaatattaatacttcac 42266832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 37514929 - 37514994
Alignment:
Q  18 acatcaaaaatatcatctgt-aacacacaacgtaatcatcatctcataataacttagaccacacaa 82  Q
    |||||| ||||||||||| | |||||||||| ||||||||||||||||||||| || || ||||||    
T  37514929 acatcataaatatcatcttttaacacacaacataatcatcatctcataataacataaacaacacaa 37514994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 313
Target Start/End: Complemental strand, 13428655 - 13428620
Alignment:
Q  278 ttaaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||| |||||    
T  13428655 ttaaacaacaacgattaataaatattaatatttcac 13428620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 19127733 - 19127767
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    ||||||||||||||||||||||||||||| |||||    
T  19127733 taaacaacaacgattaataaatattaatatttcac 19127767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 20046711 - 20046677
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||| ||||||||||||||||||||||||    
T  20046711 taaacaacaatgattaataaatattaatacttcac 20046677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 22206958 - 22206992
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    ||||||||||| |||||||||||||||||||||||    
T  22206958 taaacaacaacaattaataaatattaatacttcac 22206992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 22259636 - 22259602
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||| ||||||||||||||||||||||||    
T  22259636 taaacaacaatgattaataaatattaatacttcac 22259602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 23669197 - 23669231
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    ||||||||||||||||||||||||||||| |||||    
T  23669197 taaacaacaacgattaataaatattaatatttcac 23669231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 26219347 - 26219381
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||| ||||||||||||||||||||||||    
T  26219347 taaacaacaatgattaataaatattaatacttcac 26219381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 284 - 313
Target Start/End: Complemental strand, 5083596 - 5083567
Alignment:
Q  284 aacaacgattaataaatattaatacttcac 313  Q
    ||||||||||||||||||||||||||||||    
T  5083596 aacaacgattaataaatattaatacttcac 5083567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 5610466 - 5610421
Alignment:
Q  18 acatcaaaaatatcatctgtaacacacaacgtaatcatcatctcat 63  Q
    |||||| ||||||||||| |||||| |||| |||||||||||||||    
T  5610466 acatcataaatatcatctttaacacccaacataatcatcatctcat 5610421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 82
Target Start/End: Original strand, 37515097 - 37515138
Alignment:
Q  41 acacaacgtaatcatcatctcataataacttagaccacacaa 82  Q
    ||||||| |||||||||||||||||||||||| || ||||||    
T  37515097 acacaacataatcatcatctcataataacttaaacaacacaa 37515138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 54; Significance: 6e-22; HSPs: 19)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 361371 - 361436
Alignment:
Q  18 acatcaaaaatatcatctgtaacacacaacgtaatcatcatctcataataacttagaccacacaac 83  Q
    |||||| ||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  361371 acatcataaatatcatctttaacacacaacataatcatcatctcataataacttagaccacacaac 361436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 19856832 - 19856897
Alignment:
Q  18 acatcaaaaatatcatctgtaacacacaacgtaatcatcatctcataataacttagaccacacaac 83  Q
    ||||||| |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||    
T  19856832 acatcaataatatcatatttaacacacaacgtaatcatcatctcataataacttagaccacacaac 19856897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 4859087 - 4859053
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  4859087 taaacaacaacgattaataaatattaatacttcac 4859053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 9637635 - 9637669
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  9637635 taaacaacaacgattaataaatattaatacttcac 9637669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 10357791 - 10357757
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  10357791 taaacaacaacgattaataaatattaatacttcac 10357757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 13037076 - 13037042
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  13037076 taaacaacaacgattaataaatattaatacttcac 13037042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 16296279 - 16296313
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  16296279 taaacaacaacgattaataaatattaatacttcac 16296313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 19734116 - 19734150
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  19734116 taaacaacaacgattaataaatattaatacttcac 19734150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 33244503 - 33244469
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  33244503 taaacaacaacgattaataaatattaatacttcac 33244469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 40229262 - 40229296
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  40229262 taaacaacaacgattaataaatattaatacttcac 40229296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 46642377 - 46642411
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  46642377 taaacaacaacgattaataaatattaatacttcac 46642411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 51992301 - 51992335
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  51992301 taaacaacaacgattaataaatattaatacttcac 51992335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 66
Target Start/End: Original strand, 6189859 - 6189907
Alignment:
Q  18 acatcaaaaatatcatctgtaacacacaacgtaatcatcatctcataat 66  Q
    |||||| ||||||||||| ||||||||||| |||||||||| |||||||    
T  6189859 acatcataaatatcatctttaacacacaacataatcatcatttcataat 6189907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 18 - 69
Target Start/End: Complemental strand, 13593014 - 13592962
Alignment:
Q  18 acatcaaaaatatcatctgt-aacacacaacgtaatcatcatctcataataac 69  Q
    |||||| ||||||||||| | |||||||||| |||||||||||||||||||||    
T  13593014 acatcataaatatcatcttttaacacacaacataatcatcatctcataataac 13592962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 313
Target Start/End: Original strand, 361763 - 361798
Alignment:
Q  278 ttaaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||| |||||    
T  361763 ttaaacaacaacgattaataaatattaatatttcac 361798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 313
Target Start/End: Original strand, 19857090 - 19857125
Alignment:
Q  278 ttaaacaacaacgattaataaatattaatacttcac 313  Q
    ||||||||||| ||||||||||||||||||||||||    
T  19857090 ttaaacaacaatgattaataaatattaatacttcac 19857125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 19436034 - 19436000
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||| ||||||||||||||    
T  19436034 taaacaacaacgattaataagtattaatacttcac 19436000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 44773647 - 44773613
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||| ||||||||||||||||||||||||    
T  44773647 taaacaacaatgattaataaatattaatacttcac 44773613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Original strand, 15189612 - 15189657
Alignment:
Q  18 acatcaaaaatatcatctgtaacacacaacgtaatcatcatctcat 63  Q
    |||||| ||||||||||| ||||||||| | |||||||||||||||    
T  15189612 acatcataaatatcatctttaacacacagcataatcatcatctcat 15189657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 15874725 - 15874788
Alignment:
Q  20 atcaaaaatatcatctgtaacacacaacgtaatcatcatctcataataacttagaccacacaac 83  Q
    |||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||    
T  15874725 atcataaatatcatctttaacacataacgtaatcatcatctcataataacttagaccacacaac 15874788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 20 - 83
Target Start/End: Original strand, 18913159 - 18913222
Alignment:
Q  20 atcaaaaatatcatctgtaacacacaacgtaatcatcatctcataataacttagaccacacaac 83  Q
    |||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||    
T  18913159 atcataaatatcatctttaacacacaacgtaatcatcatctcataataacttagaccaaacaac 18913222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 29 - 81
Target Start/End: Complemental strand, 31631079 - 31631027
Alignment:
Q  29 atcatctgtaacacacaacgtaatcatcatctcataataacttagaccacaca 81  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||||||||||    
T  31631079 atcatctttaacacacaacataatcatcatctcataataacttagaccacaca 31631027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 20412053 - 20412019
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  20412053 taaacaacaacgattaataaatattaatacttcac 20412019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 23492537 - 23492503
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  23492537 taaacaacaacgattaataaatattaatacttcac 23492503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 23498135 - 23498101
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  23498135 taaacaacaacgattaataaatattaatacttcac 23498101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 82
Target Start/End: Original strand, 2076397 - 2076430
Alignment:
Q  49 taatcatcatctcataataacttagaccacacaa 82  Q
    ||||||||||||||||||||||||||||||||||    
T  2076397 taatcatcatctcataataacttagaccacacaa 2076430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 27329175 - 27329143
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttc 311  Q
    |||||||||||||||||||||||||||||||||    
T  27329175 taaacaacaacgattaataaatattaatacttc 27329143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 27389915 - 27389883
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttc 311  Q
    |||||||||||||||||||||||||||||||||    
T  27389915 taaacaacaacgattaataaatattaatacttc 27389883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 18319019 - 18319062
Alignment:
Q  40 cacacaacgtaatcatcatctcataataacttagaccacacaac 83  Q
    |||| ||| ||||||||||||||||||||| |||||||||||||    
T  18319019 cacataacataatcatcatctcataataacatagaccacacaac 18319062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 18322419 - 18322462
Alignment:
Q  40 cacacaacgtaatcatcatctcataataacttagaccacacaac 83  Q
    |||| ||| ||||||||||||||||||||| |||||||||||||    
T  18322419 cacataacataatcatcatctcataataacatagaccacacaac 18322462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 310
Target Start/End: Complemental strand, 19830222 - 19830191
Alignment:
Q  279 taaacaacaacgattaataaatattaatactt 310  Q
    ||||||||||||||||||||||||||||||||    
T  19830222 taaacaacaacgattaataaatattaatactt 19830191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 20734706 - 20734672
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||| ||||||||||||||||||||||||||    
T  20734706 taaacaaccacgattaataaatattaatacttcac 20734672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 23017465 - 23017431
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||| ||||||    
T  23017465 taaacaacaacgattaataaatattaattcttcac 23017431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 67
Target Start/End: Original strand, 27850460 - 27850510
Alignment:
Q  18 acatcaaaaatatcatctgtaacacac-aacgtaatcatcatctcataata 67  Q
    |||||| ||||||||||| |||||||| ||| |||||||||||||||||||    
T  27850460 acatcataaatatcatctttaacacacaaacataatcatcatctcataata 27850510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 41 - 69
Target Start/End: Complemental strand, 25621696 - 25621668
Alignment:
Q  41 acacaacgtaatcatcatctcataataac 69  Q
    |||||||||||||||||||||||||||||    
T  25621696 acacaacgtaatcatcatctcataataac 25621668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0278 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0278
Description:

Target: scaffold0278; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 6785 - 6850
Alignment:
Q  18 acatcaaaaatatcatctgtaacacacaacgtaatcatcatctcataataacttagaccacacaac 83  Q
    |||||| || |||||||| ||||| |||||||||||||||||||||||||||||||||||||||||    
T  6785 acatcataactatcatctttaacatacaacgtaatcatcatctcataataacttagaccacacaac 6850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 105847 - 105912
Alignment:
Q  18 acatcaaaaatatcatctgtaacacacaacgtaatcatcatctcataataacttagaccacacaac 83  Q
    |||||| ||||||||||| ||||||||||| |||||||||||||||  ||||||||||||||||||    
T  105847 acatcataaatatcatctttaacacacaacataatcatcatctcatgttaacttagaccacacaac 105912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 278 - 313
Target Start/End: Original strand, 106073 - 106108
Alignment:
Q  278 ttaaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||| |||||||||||||||||||||||    
T  106073 ttaaacaacaacaattaataaatattaatacttcac 106108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 361882 - 361947
Alignment:
Q  18 acatcaaaaatatcatctgtaacacacaacgtaatcatcatctcataataacttagaccacacaac 83  Q
    |||||| || ||| |||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  361882 acatcataattataatctttaacacacaacgtaatcatcatctcgtaataacttagaccacacaac 361947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 279 - 314
Target Start/End: Complemental strand, 78662 - 78627
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcacg 314  Q
    ||||||||||||||||||||||||||||||||||||    
T  78662 taaacaacaacgattaataaatattaatacttcacg 78627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0630 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0630
Description:

Target: scaffold0630; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 7875 - 7909
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  7875 taaacaacaacgattaataaatattaatacttcac 7909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0462 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0462
Description:

Target: scaffold0462; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 188 - 222
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  188 taaacaacaacgattaataaatattaatacttcac 222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0462; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 5694 - 5728
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  5694 taaacaacaacgattaataaatattaatacttcac 5728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0371 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0371
Description:

Target: scaffold0371; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 11603 - 11569
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  11603 taaacaacaacgattaataaatattaatacttcac 11569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0195 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0195
Description:

Target: scaffold0195; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 16964 - 16998
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  16964 taaacaacaacgattaataaatattaatacttcac 16998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0170 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0170
Description:

Target: scaffold0170; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 2304 - 2338
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  2304 taaacaacaacgattaataaatattaatacttcac 2338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0077 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0077
Description:

Target: scaffold0077; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 13855 - 13889
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  13855 taaacaacaacgattaataaatattaatacttcac 13889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 47799 - 47765
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  47799 taaacaacaacgattaataaatattaatacttcac 47765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 11142 - 11108
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  11142 taaacaacaacgattaataaatattaatacttcac 11108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0031 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0031
Description:

Target: scaffold0031; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 48 - 82
Target Start/End: Complemental strand, 37206 - 37172
Alignment:
Q  48 gtaatcatcatctcataataacttagaccacacaa 82  Q
    |||||||||||||||||||||||||||||||||||    
T  37206 gtaatcatcatctcataataacttagaccacacaa 37172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 26092 - 26058
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  26092 taaacaacaacgattaataaatattaatacttcac 26058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 31609 - 31643
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  31609 taaacaacaacgattaataaatattaatacttcac 31643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 36916 - 36950
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  36916 taaacaacaacgattaataaatattaatacttcac 36950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 17)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 12122758 - 12122724
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  12122758 taaacaacaacgattaataaatattaatacttcac 12122724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 16227117 - 16227151
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  16227117 taaacaacaacgattaataaatattaatacttcac 16227151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 20565195 - 20565229
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  20565195 taaacaacaacgattaataaatattaatacttcac 20565229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 21555640 - 21555606
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  21555640 taaacaacaacgattaataaatattaatacttcac 21555606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 26761204 - 26761238
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  26761204 taaacaacaacgattaataaatattaatacttcac 26761238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 5890027 - 5889982
Alignment:
Q  18 acatcaaaaatatcatctgtaacacacaacgtaatcatcatctcat 63  Q
    |||||| ||||||||||| |||||| ||||||||||||||||||||    
T  5890027 acatcataaatatcatctttaacacccaacgtaatcatcatctcat 5889982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 82
Target Start/End: Complemental strand, 22108416 - 22108384
Alignment:
Q  50 aatcatcatctcataataacttagaccacacaa 82  Q
    |||||||||||||||||||||||||||||||||    
T  22108416 aatcatcatctcataataacttagaccacacaa 22108384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 36510080 - 36510048
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttc 311  Q
    |||||||||||||||||||||||||||||||||    
T  36510080 taaacaacaacgattaataaatattaatacttc 36510048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 313
Target Start/End: Complemental strand, 5889796 - 5889766
Alignment:
Q  283 caacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||    
T  5889796 caacaacgattaataaatattaatacttcac 5889766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 17874807 - 17874841
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||| ||||||||||||||||||||||||||    
T  17874807 taaacaaccacgattaataaatattaatacttcac 17874841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 21558305 - 21558271
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    ||||||||||||||| |||||||||||||||||||    
T  21558305 taaacaacaacgattgataaatattaatacttcac 21558271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 313
Target Start/End: Complemental strand, 21742178 - 21742148
Alignment:
Q  283 caacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||    
T  21742178 caacaacgattaataaatattaatacttcac 21742148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 23203015 - 23202981
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    ||||||||||||||||| |||||||||||||||||    
T  23203015 taaacaacaacgattaaaaaatattaatacttcac 23202981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 39244744 - 39244778
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||| ||||||||||||||||||||||||    
T  39244744 taaacaacaatgattaataaatattaatacttcac 39244778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 6765165 - 6765230
Alignment:
Q  18 acatcaaaaatatcatctgt-aacacacaacgtaatcatcatctcataataacttagaccacacaa 82  Q
    |||||| ||||||||||| | |||||||||| |||||||||||||| |||||| || || ||||||    
T  6765165 acatcataaatatcatcttttaacacacaacataatcatcatctcacaataacataaacgacacaa 6765230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 22120559 - 22120526
Alignment:
Q  49 taatcatcatctcataataacttagaccacacaa 82  Q
    ||||||||||||||||||||||||||| ||||||    
T  22120559 taatcatcatctcataataacttagactacacaa 22120526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 18 - 69
Target Start/End: Original strand, 262397 - 262449
Alignment:
Q  18 acatcaaaaatatcatctgt-aacacacaacgtaatcatcatctcataataac 69  Q
    |||||| ||||||||||| | |||||||||| |||||||||||||| ||||||    
T  262397 acatcataaatatcatcttttaacacacaacataatcatcatctcacaataac 262449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 10897938 - 10897904
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  10897938 taaacaacaacgattaataaatattaatacttcac 10897904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 18389570 - 18389536
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  18389570 taaacaacaacgattaataaatattaatacttcac 18389536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 25085192 - 25085226
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||||||    
T  25085192 taaacaacaacgattaataaatattaatacttcac 25085226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 24782212 - 24782180
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttc 311  Q
    |||||||||||||||||||||||||||||||||    
T  24782212 taaacaacaacgattaataaatattaatacttc 24782180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 311
Target Start/End: Original strand, 24883204 - 24883236
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttc 311  Q
    |||||||||||||||||||||||||||||||||    
T  24883204 taaacaacaacgattaataaatattaatacttc 24883236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 356780 - 356814
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||| ||||||||||||||||||||||||||    
T  356780 taaacaaccacgattaataaatattaatacttcac 356814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 9974667 - 9974701
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||| ||||||||||||||||||||||||||    
T  9974667 taaacaaccacgattaataaatattaatacttcac 9974701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 22688465 - 22688499
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    ||||||||||||||||||||||||||||| |||||    
T  22688465 taaacaacaacgattaataaatattaatatttcac 22688499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 28576734 - 28576768
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||| ||||||||||||||||||||||||    
T  28576734 taaacaacaatgattaataaatattaatacttcac 28576768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 45030400 - 45030366
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||| ||||||||||||||||||||||||    
T  45030400 taaacaacaatgattaataaatattaatacttcac 45030366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 312
Target Start/End: Complemental strand, 5032674 - 5032641
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttca 312  Q
    ||||||||||||||||| ||||||||||||||||    
T  5032674 taaacaacaacgattaacaaatattaatacttca 5032641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 82
Target Start/End: Original strand, 9784105 - 9784138
Alignment:
Q  49 taatcatcatctcataataacttagaccacacaa 82  Q
    |||| |||||||||||||||||||||||||||||    
T  9784105 taattatcatctcataataacttagaccacacaa 9784138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 27485977 - 27485912
Alignment:
Q  18 acatcaaaaatatcatctgt-aacacacaacgtaatcatcatctcataataacttagaccacacaa 82  Q
    |||||| ||||||||||| | |||||||||| |||||||||||||| |||||| || || ||||||    
T  27485977 acatcataaatatcatcttttaacacacaacataatcatcatctcacaataacataaacaacacaa 27485912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 307
Target Start/End: Original strand, 19357726 - 19357754
Alignment:
Q  279 taaacaacaacgattaataaatattaata 307  Q
    |||||||||||||||||||||||||||||    
T  19357726 taaacaacaacgattaataaatattaata 19357754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 313
Target Start/End: Original strand, 22500627 - 22500659
Alignment:
Q  281 aacaacaacgattaataaatattaatacttcac 313  Q
    |||||| ||||||||||||||||||||||||||    
T  22500627 aacaaccacgattaataaatattaatacttcac 22500659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 281 - 313
Target Start/End: Original strand, 22508561 - 22508593
Alignment:
Q  281 aacaacaacgattaataaatattaatacttcac 313  Q
    |||||| ||||||||||||||||||||||||||    
T  22508561 aacaaccacgattaataaatattaatacttcac 22508593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 279 - 307
Target Start/End: Original strand, 23285456 - 23285484
Alignment:
Q  279 taaacaacaacgattaataaatattaata 307  Q
    |||||||||||||||||||||||||||||    
T  23285456 taaacaacaacgattaataaatattaata 23285484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0780 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0780
Description:

Target: scaffold0780; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 4201 - 4136
Alignment:
Q  18 acatcaaaaatatcatctgt-aacacacaacgtaatcatcatctcataataacttagaccacacaa 82  Q
    |||||| ||||||||||| | |||||||||| ||||||||||||||||||||| || || ||||||    
T  4201 acatcataaatatcatcttttaacacacaacataatcatcatctcataataacataaacaacacaa 4136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0575 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0575
Description:

Target: scaffold0575; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 6928 - 6895
Alignment:
Q  49 taatcatcatctcataataacttagaccacacaa 82  Q
    ||||||||||||||||||||||||||||||||||    
T  6928 taatcatcatctcataataacttagaccacacaa 6895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0375 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0375
Description:

Target: scaffold0375; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 279 - 312
Target Start/End: Complemental strand, 9652 - 9619
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttca 312  Q
    ||||||||||||||||||||||||||||||||||    
T  9652 taaacaacaacgattaataaatattaatacttca 9619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0293 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0293
Description:

Target: scaffold0293; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 21306 - 21273
Alignment:
Q  49 taatcatcatctcataataacttagaccacacaa 82  Q
    ||||||||||||||||||||||||||||||||||    
T  21306 taatcatcatctcataataacttagaccacacaa 21273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0013 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0013
Description:

Target: scaffold0013; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 74299 - 74266
Alignment:
Q  49 taatcatcatctcataataacttagaccacacaa 82  Q
    ||||||||||||||||||||||||||||||||||    
T  74299 taatcatcatctcataataacttagaccacacaa 74266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0450 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0450
Description:

Target: scaffold0450; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 311
Target Start/End: Original strand, 13425 - 13457
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttc 311  Q
    |||||||||||||||||||||||||||||||||    
T  13425 taaacaacaacgattaataaatattaatacttc 13457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 279 - 311
Target Start/End: Complemental strand, 19919 - 19887
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttc 311  Q
    |||||||||||||||||||||||||||||||||    
T  19919 taaacaacaacgattaataaatattaatacttc 19887  T

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Target: scaffold0509 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0509
Description:

Target: scaffold0509; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 310
Target Start/End: Complemental strand, 10110 - 10079
Alignment:
Q  279 taaacaacaacgattaataaatattaatactt 310  Q
    ||||||||||||||||||||||||||||||||    
T  10110 taaacaacaacgattaataaatattaatactt 10079  T

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Target: scaffold0230 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0230
Description:

Target: scaffold0230; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 21450 - 21407
Alignment:
Q  40 cacacaacgtaatcatcatctcataataacttagaccacacaac 83  Q
    |||| ||| ||||||||||||||||||||| |||||||||||||    
T  21450 cacataacataatcatcatctcataataacatagaccacacaac 21407  T

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Target: scaffold0230; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 24445 - 24402
Alignment:
Q  40 cacacaacgtaatcatcatctcataataacttagaccacacaac 83  Q
    |||| ||| ||||||||||||||||||||| |||||||||||||    
T  24445 cacataacataatcatcatctcataataacatagaccacacaac 24402  T

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Target: scaffold0220 (Bit Score: 32; Significance: 0.000000008; HSPs: 2)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 279 - 310
Target Start/End: Original strand, 3237 - 3268
Alignment:
Q  279 taaacaacaacgattaataaatattaatactt 310  Q
    ||||||||||||||||||||||||||||||||    
T  3237 taaacaacaacgattaataaatattaatactt 3268  T

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Target: scaffold0220; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 15502 - 15536
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    ||||||||||| |||||||||||||||||||||||    
T  15502 taaacaacaacaattaataaatattaatacttcac 15536  T

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Target: scaffold1815 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold1815
Description:

Target: scaffold1815; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 808 - 842
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||| ||||||||||||||||||||||||    
T  808 taaacaacaatgattaataaatattaatacttcac 842  T

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Target: scaffold0737 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0737
Description:

Target: scaffold0737; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 6998 - 6964
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||| ||||||||||||||||||||||||    
T  6998 taaacaacaatgattaataaatattaatacttcac 6964  T

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Target: scaffold0529 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0529
Description:

Target: scaffold0529; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 7088 - 7122
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    ||||||||||||||||||||||||||| |||||||    
T  7088 taaacaacaacgattaataaatattaaaacttcac 7122  T

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Target: scaffold0241 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0241
Description:

Target: scaffold0241; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 1147 - 1181
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    ||||||||||||||||||||||||||||| |||||    
T  1147 taaacaacaacgattaataaatattaatatttcac 1181  T

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Target: scaffold0149 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0149
Description:

Target: scaffold0149; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 20430 - 20464
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||| ||||||||||||||||||||||||    
T  20430 taaacaacaatgattaataaatattaatacttcac 20464  T

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Target: scaffold0134 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0134
Description:

Target: scaffold0134; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Complemental strand, 10494 - 10460
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    ||||||||||||||||||||||||||||| |||||    
T  10494 taaacaacaacgattaataaatattaatatttcac 10460  T

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Target: scaffold0098 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 283 - 313
Target Start/End: Original strand, 38899 - 38929
Alignment:
Q  283 caacaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||||    
T  38899 caacaacgattaataaatattaatacttcac 38929  T

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Target: scaffold0020 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0020
Description:

Target: scaffold0020; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 142254 - 142288
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    ||||| |||||||||||||||||||||||||||||    
T  142254 taaacgacaacgattaataaatattaatacttcac 142288  T

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Target: scaffold0008 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0008
Description:

Target: scaffold0008; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 313
Target Start/End: Original strand, 71549 - 71583
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttcac 313  Q
    |||||||||| ||||||||||||||||||||||||    
T  71549 taaacaacaatgattaataaatattaatacttcac 71583  T

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Target: scaffold0601 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0601
Description:

Target: scaffold0601; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 8826 - 8781
Alignment:
Q  18 acatcaaaaatatcatctgtaacacacaacgtaatcatcatctcat 63  Q
    |||||| ||||||||||| ||||||||| | |||||||||||||||    
T  8826 acatcataaatatcatctttaacacacatcataatcatcatctcat 8781  T

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Target: scaffold0142 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0142
Description:

Target: scaffold0142; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 82
Target Start/End: Complemental strand, 8707 - 8674
Alignment:
Q  49 taatcatcatctcataataacttagaccacacaa 82  Q
    |||||||||||||||||||| |||||||||||||    
T  8707 taatcatcatctcataataatttagaccacacaa 8674  T

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Target: scaffold0108 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0108
Description:

Target: scaffold0108; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 279 - 312
Target Start/End: Original strand, 5153 - 5186
Alignment:
Q  279 taaacaacaacgattaataaatattaatacttca 312  Q
    ||||||||| ||||||||||||||||||||||||    
T  5153 taaacaacatcgattaataaatattaatacttca 5186  T

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Target: scaffold0056 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 54 - 83
Target Start/End: Complemental strand, 79858 - 79829
Alignment:
Q  54 atcatctcataataacttagaccacacaac 83  Q
    ||||||||||||||||||||||||||||||    
T  79858 atcatctcataataacttagaccacacaac 79829  T

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Target: scaffold0218 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0218
Description:

Target: scaffold0218; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 285 - 313
Target Start/End: Complemental strand, 9347 - 9319
Alignment:
Q  285 acaacgattaataaatattaatacttcac 313  Q
    |||||||||||||||||||||||||||||    
T  9347 acaacgattaataaatattaatacttcac 9319  T

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Target: scaffold0200 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0200
Description:

Target: scaffold0200; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 43 - 83
Target Start/End: Original strand, 11151 - 11191
Alignment:
Q  43 acaacgtaatcatcatctcataataacttagaccacacaac 83  Q
    ||||| || |||||||| |||||||||||||||||||||||    
T  11151 acaacatattcatcatcacataataacttagaccacacaac 11191  T

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